Basic Information

Gene Symbol
JARID2
Assembly
GCA_030522685.1
Location
JAPYZA010000385.1:10106-19093[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-22 8.6e-19 69.5 0.0 6 89 1461 1542 1457 1542 0.94

Sequence Information

Coding Sequence
ATGGTTTTAAGCCGAAATGACaagagaaaaaggaaagaagGAGACCTTGTGGATCTCATGGATCCACTTGCAGAGCCTCAGAAAagAACCAAAATACACGCACAAAGAAAGTTTGCTCAAGGAGCAGCTACTCCTGTGTTCAGTCCCACGAGCACACCTATTAAAGAGAAGGAAAAAGTAAAGCCTGCTGTATTCACTGAGCTGATAACGCACAAAAGGCCAAACACAGAAGACTTTTTAACATTCCTTTGTTTTAgagGTACATCGATACTACCTCCAAGTCTGAATTTCTTCAGCACAAGTTCCAAAAAGGACAAGCTGCAAGATGCCTCCAAATCATCTCCTCCTTCCGCCcttttttctaaaacaaatgGCACATGTGGCAAACCATTACCACAATCTAAAACTGAAAACCCCACATCGGCTTCTCAAAAGACAACAATGGTCAAAGAGAAGCCCGTACCTGTTCCTAAGAAACAAGTCGCCGCGAGCATCCCCAAAACGATCAAGCTCAAAACGACTAGTACTGCCATTCAGGCCCTCAAGAAAAAGTATCAGGAGCAGAGGCTCGCTAAACAGCGTCTCAAAAAGTTCAAGCCTACCTCCATGAAGACGCGTTCGTGCGCTTCCGTGGTTGAACGAGCACCCGAGAAAGTCGTGGTACCAAAGGTCGTCACCTCCAAGAAAATCGTACCACCGATAGAACGCAAACGACACGGCCTGAGAAGTACTGGCATGTCCGAAAGCGAGAAGAAGAGCCTACCGCTCAAGGCCATTAAAAAACAACAGCTCGTAgcgaaattaaaaaagaaagtcgCAAAAGAGGACACATCTAGCGTTGATTCGTTCACTTTAAAAAGCACCGTCAAAAAGGTCGCGGCGAAGCCGACCGTGACGAGTAAACCGATACACAAGAAGCTCCTGAACAAAAGCAAGAAAATCCAGGCTAAGCGAGTTACGCGATCACGCGCTGATGTCCCTAGGCCCAAGTCGGCATCCCCGGCCCCGACGAGAAGGCCTACGAGGAAGACGAAGGAGGCTGCAGCCGTGTATATGGAGATTTTGGGTAGGAAACTGGTAAGCCCGGAACTGGAGAACGATGATAACATGTCGCTGGACAGTTTTCCGGAATTGCCAAACGCGAGGAAGATGGCACAAACGGAGAATGAGATTAAGGCGAAAGTTAAGTCGATGAAGGCCGCTGCGACTGTAAACGTCAATTCGGGCgttaaagaaaaggaaaaagaaaaggagaaagaaaaagaaaaggagaaggagaaagaaaaggagaaggagaaagagaaagagaaggagaaagaaaaGAAGACAACAAACAGTGATAGcaACAGTAAACCGGCAAAAAGGAAAATCGTAAAGCCAGTCTTgccattaaaaaataaaagactgGTAAAAGTGCAAAAGTATACCGAGCTGAACAGCGACGATGAATCGATCAGTTCTAAGGAGATGAACGAAATAGTCAAAGTCCCTGTGGCGAAGAGGCGATCGGCCCCCATAAGCACTCTCAAAACTAAGAAGCTGGATAACCGTAAGCTTAGATCTAGCCGGAGTCTCGTATCTAGGAAAAGTCTTTCTAAATCTAATGACACTCCGCGTGTCACCTCCAACGACTCAGATAAATCAGCAAAGAATGCAGAGCCTCAAAGTACCGTTAAAACTACTAAAGAAACTAGTAGCAAGGACACAGGTAAAGAGACGCCGAAGGAGAAGACGGCTCCCGCCAAGCGAAAACGTGACTCCAACGTCAACGACAAGGAAAAGGACAAAGAGAAAGATACGGCGAATTCTTCCAAACAGAAGTCAGAGGCAGCGAAGAACAAGAGTAAAACCACCGAGACCGAAATCGAATCCGAAGAAGAAACCTTGGGAACGCTTCTGCacaagatgaagaagaagaaggagagcGAGAAGGAAGAGGCCAGCAGCGAGGCCGTAACCAAAAAGGTAGCTGAACCGAAAGCAGCTAAGCCTTCAGTGACGGCACCGATAACGACACCGAAACCGACGATTGTCGAGACACTAAAGACGCAAGCCGTCGTTGAGAGCACAACGAAGATCTCCGACGACGAGGAGTCCTTCCGCGGCTTCACCAAGAAGGCCATTACCAAAGCGACCTTGGCTTGTCAGCCCCCGGCGGTCATCAAGCCCGACGACGTCGACAGCAAGGCGAACGTGCTTAAGCCTCACGACATCTCGCTAAAGGATACAAAGAAGCCAGACATCAAAACCTCGACGAGCCCGTTCCCTTGCATCAAGCCGATGCAGGATCAGCTGATGGGCAGCCACACGACCAGTACCGCGGCCAACGCCTCCGTTAAGCTCGAACCGGACTTCGGAGACATGAAGAATCATGAACGTTCGAAGGTATCGGCCAGCACTCCGGCCCCGAGCTCGCTCAACATCTACGACATGCCGAAGGGCCTGACGCCCTCGCACCGCAAGGAGCGCGTCAACATGTCGGCGGAGCAGATCGAGAAGTGGCTGAGCGAGAGCTCGCTCGCCAAGGAGGAGAGCAAAGTCGAGATGGAGTCCGTCTCCGGAGTCTTCAAGTACGACGGCAGTCCGTTCGTCGAGCCGAAGAAGAGCGAGCCGCCTCCGGCGCCGCCGGTGACGCCCAGCCACGGTCACCTCTCCATATCGCCGAGGATCCAGCACCTGGTGAGGCCGGTCAACGTCACGCTCTCCAAGCTGTCCGACAGGCTGAAGGTCGCCTCGATGGGGGTAGGCACTCCAAGAACTATGCCCACCGCGCTGTTTCATCACGTGAAGCCGCAGACGCCGATTGTCACCGCGAAGAAGCCGGCTGTGACGCAGCCgtcgccgacgccgccgcctaGTGATAAGAAGGAGGCGCCCAAGGAGACGAGCAGCGCGCTGCCGAGCAGGAAGATGAGCAAGGACTCGTCCTTTGGGGAGGATCACGCGGACAGCGACGTAGTGTCAAAGTCGGACGCTACCTCGGTGGGCGACTCGTCGGAAAAGAAGTCCCTGAACAGTCCCGAGAAGAAGGTTTTTTTTCACCAGCGCAAGCCCTTTCTGCCCAAGGTCAAGGAGCGCAAGCCCTCGAGCAGCGCGTCCGCCTTCTCGCCCGAGAACGAGAGCAGCGTTTACGCGTTCGAGTCCGAGGCCGAGACGCCAGTGAGCACGCCCTTTCGCAGAAAGGCAAAAGAGCCCGTCAAATGCACCGaaACCAACGATAAGGATAAATCAGCGAGTACACAGTCAACGACTACTGAAGCGAAGAGTAAAAGTGGCGAGGAAACAACAAAAGTTACCGAGCCTTTAAACTCGCAAGAGGAAGCTCGGAAGGACGAAGAAAAATCGCCTCCGCTGTTAGAAAGAACAACGCCAAAGAACTTCGAGCTTCCGAAAAACTTCGCAGATTTAACAAACATACAGgtGTTACCACTAGACAAACTAACAACAAGCTGGAGCAATGTTAACTGCAGTGCTTCGATAGCCGTGCAGGTCAATCTGGACGACCAgaagcagcaacagcagcagcagggcCAGCAACAATCAACGACAGCGGAGAGCAATGAGTCTAGTGCCGTGCAGAAGAGCACCGAGATATCCACGCAAACGGATGCTAATACGGACAATGACGACGACGACAGCGGTCAGCTATTTTACATTCCCCTGCAGGCGGTGACGCGCAACGGCTCGGCCCAAGGCGGTCAGCAACTCATCCAGGGCGTAGCAGTGAAGCTGGGTACCGAGGGTCCCACTGGACCAAATCAGAGGGTCCTGCTTAAAGCCAAGCTCGTTACGAAACCGCCGATTTCGGTGGCGAGATGTCCACCCATCGGCACCGTGCAGCCGACTGCGAGAACACCGCAGAATACCAGTGTGGACCAAGCGGATTTGCCGTCAACGTCGACAGTAGGCACGGGAGATGCAGGATTCAAATTCCAGTCGCCTGCTGAGAAAGTGACAAAAACGTCGACGATTCGTAAAACACCTGAAAAAAgtcctgaaaaaataatcaaatcacCGAAGAGTAGAGAAAGGAAGATGTCAGCCGACGGAGGCAAAGGAGGAAAGAGAGCTCAAACAAAAGCAAAGCCAATAGAAGTTCATTcaccaataaataaaactacatttCCAACAATGAAAAATCCTAGTGATGAAGCTTGCCTTGTAGAGGCACCGACCTTTCGCCCCTCAGAGAAAGACTTTCAGGACCCGTTGGAGTACATTGACAAAATACGACCGATTGCGGAAAAATTCGGAATTTGCAAAGTAGTTCCTCCTTCaaattttaagCCGGAATGTAAAGTTTCGGATGACATGCGATTTACAGCTTACAATCATTACGTTCACCGAATGCTTCATCGCTGGGGCCCAAACGTAAAAGAAATGATGgctataaagaaatatttagcTACGCAAAGTATAACTCTAACTCAACCACCATGgattggTGGTATGGAAGTTGATCTCCCACATTTGTATCAAACTGTACAAAATTTAGGTGGACTGAAAGAAGTTATTGAAAAGAAGAAGTGGCAAAAGGTAGCAGACGGCATGAAAATACCAAGATCCGCGCAAGATCGGGTCACTAAATTGGATGATATTTACTGCAAATATTTACTTCCTTATGATACGTTATCGCAAGaggaaagagataaattatttaaagacgTGGAAGCTGACTGGATAAAGAGGGAAAAAAGAGATAGGCAAGAAACACAGTCTACTGATAATGaagatgatgatgacgaagacAGTACTGAAGAAATAGAAGAATGTATTGTAAAAGGCCGCAATATGCCGTTGAACGCATTCTACCGGATCGCACGAAACACTCAGCGCATGTGGTTCGGTGAACCACAAAAACCAACAGCTGAAACAGAATGTGCGGCAGCGGATGAGGTCGAAGCTGCCTTCTGGCGTCATGTCGTCGAGAAGAAACGTCATGTATGTGTGCATGCTGCGAGCATCGATTCCAGTGGTCGTGGCTTCGGCTTTTCTGTCGCTAAGAATAGTCCCTTCGGTCGGCACCCTTGGAACCTCAAAATTCTCACTAACAATGCCGGCTCAGTGCTCAGGGCTCTTGGTCCACAAATGGgtgtGACGGTTCCAACGCTACACGTTGGTATGCTCTTTAGCGCCTGTTGTTGGTACCGCGACCCACATGGATTGCCTTGGATCGAATACCTGCACACAGGCGCAAAGAAGATCTGGTACGGCATACCGAACGAACAAAACAGTACGTTCCGCAAGGCCCTGACCGAGATGTTCCCGCGCTACTGTAAGAACAAAACGATCTGGCTGCCCTCGGACACGGCTATGGTACCACCTGACATGCTTGTAAGCAATGGTGTGCCACTCTGTCAAACCGTGCAAGAACCTGGTCAGTTTATCGTCGTTTTTCCTAAAGCTTTTACCTCGAGTATTTGCACGGGTTACGTCGTCTCCGAAAGCGTCTACTTCGCTCAGCCTTCCTGGCTCGAGACGGCTGAACAAGTGTTCCAAgatATACACGATAGTTGTGAGCctacaatattttcatttgaaagaCTGTTATTTAGCATTATCAATGATTCTAGATCTCATATTGATGTACTTAAACAGATTTTACCAACTGTCATCAAAGTTTGTGATGCAGAAAtagaaaatcgcaaaaaattaaaagaattaggCCTCACGAATACTGAAAAATTACCGTTGCCAGACAGTGATAAAAAAGGAAAgggtaaaaaagtaaaagaggACGAAGGAGATTACGAATGTGATACTTGCCGAGCAAACTTGTTTGTTTCTTTAGTAAGCAATCCTACAGATGAAAGCATCTTTTGCCTGACCCATGCCATACAATACATAGAGAAGAAGAaacaagttttgaaaaattgcaCGCTTATGTATACGTACAGTGAGAGTGAATTAAACGATCTTATTCACAAACTAAAAGACAGGATTGAAGCCAAATCTAAAAAGACTAATCAAACAAAACAAGCTAAatag
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLAEPQKRTKIHAQRKFAQGAATPVFSPTSTPIKEKEKVKPAVFTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFSTSSKKDKLQDASKSSPPSALFSKTNGTCGKPLPQSKTENPTSASQKTTMVKEKPVPVPKKQVAASIPKTIKLKTTSTAIQALKKKYQEQRLAKQRLKKFKPTSMKTRSCASVVERAPEKVVVPKVVTSKKIVPPIERKRHGLRSTGMSESEKKSLPLKAIKKQQLVAKLKKKVAKEDTSSVDSFTLKSTVKKVAAKPTVTSKPIHKKLLNKSKKIQAKRVTRSRADVPRPKSASPAPTRRPTRKTKEAAAVYMEILGRKLVSPELENDDNMSLDSFPELPNARKMAQTENEIKAKVKSMKAAATVNVNSGVKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKKTTNSDSNSKPAKRKIVKPVLPLKNKRLVKVQKYTELNSDDESISSKEMNEIVKVPVAKRRSAPISTLKTKKLDNRKLRSSRSLVSRKSLSKSNDTPRVTSNDSDKSAKNAEPQSTVKTTKETSSKDTGKETPKEKTAPAKRKRDSNVNDKEKDKEKDTANSSKQKSEAAKNKSKTTETEIESEEETLGTLLHKMKKKKESEKEEASSEAVTKKVAEPKAAKPSVTAPITTPKPTIVETLKTQAVVESTTKISDDEESFRGFTKKAITKATLACQPPAVIKPDDVDSKANVLKPHDISLKDTKKPDIKTSTSPFPCIKPMQDQLMGSHTTSTAANASVKLEPDFGDMKNHERSKVSASTPAPSSLNIYDMPKGLTPSHRKERVNMSAEQIEKWLSESSLAKEESKVEMESVSGVFKYDGSPFVEPKKSEPPPAPPVTPSHGHLSISPRIQHLVRPVNVTLSKLSDRLKVASMGVGTPRTMPTALFHHVKPQTPIVTAKKPAVTQPSPTPPPSDKKEAPKETSSALPSRKMSKDSSFGEDHADSDVVSKSDATSVGDSSEKKSLNSPEKKVFFHQRKPFLPKVKERKPSSSASAFSPENESSVYAFESEAETPVSTPFRRKAKEPVKCTETNDKDKSASTQSTTTEAKSKSGEETTKVTEPLNSQEEARKDEEKSPPLLERTTPKNFELPKNFADLTNIQVLPLDKLTTSWSNVNCSASIAVQVNLDDQKQQQQQQGQQQSTTAESNESSAVQKSTEISTQTDANTDNDDDDSGQLFYIPLQAVTRNGSAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPISVARCPPIGTVQPTARTPQNTSVDQADLPSTSTVGTGDAGFKFQSPAEKVTKTSTIRKTPEKSPEKIIKSPKSRERKMSADGGKGGKRAQTKAKPIEVHSPINKTTFPTMKNPSDEACLVEAPTFRPSEKDFQDPLEYIDKIRPIAEKFGICKVVPPSNFKPECKVSDDMRFTAYNHYVHRMLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQEERDKLFKDVEADWIKREKRDRQETQSTDNEDDDDEDSTEEIEECIVKGRNMPLNAFYRIARNTQRMWFGEPQKPTAETECAAADEVEAAFWRHVVEKKRHVCVHAASIDSSGRGFGFSVAKNSPFGRHPWNLKILTNNAGSVLRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPNEQNSTFRKALTEMFPRYCKNKTIWLPSDTAMVPPDMLVSNGVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFQDIHDSCEPTIFSFERLLFSIINDSRSHIDVLKQILPTVIKVCDAEIENRKKLKELGLTNTEKLPLPDSDKKGKGKKVKEDEGDYECDTCRANLFVSLVSNPTDESIFCLTHAIQYIEKKKQVLKNCTLMYTYSESELNDLIHKLKDRIEAKSKKTNQTKQAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00689949;
90% Identity
iTF_00689949; iTF_00692693;
80% Identity
-