Ekie015825.1
Basic Information
- Insect
- Eupelmus kiefferi
- Gene Symbol
- -
- Assembly
- GCA_030522745.1
- Location
- JAPYZB010013003.1:2088-4766[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.54 1.4e+02 5.3 0.2 1 23 111 134 111 134 0.94 2 15 7.6 1.9e+03 1.7 3.2 2 23 371 393 371 393 0.91 3 15 0.077 19 8.0 0.3 2 23 438 460 437 460 0.96 4 15 4.1 1e+03 2.5 0.9 1 23 488 511 488 511 0.94 5 15 0.016 4 10.1 3.6 1 23 526 549 526 549 0.97 6 15 0.056 14 8.4 0.3 1 23 559 582 559 582 0.96 7 15 0.0061 1.5 11.4 0.2 1 23 598 620 598 620 0.98 8 15 0.022 5.5 9.7 2.0 1 23 633 656 633 656 0.96 9 15 0.091 23 7.7 1.8 1 23 673 696 673 696 0.95 10 15 7.1e-06 0.0018 20.7 1.3 1 23 702 725 702 725 0.95 11 15 0.00056 0.14 14.7 1.2 3 23 732 753 730 753 0.93 12 15 0.0043 1.1 11.9 1.9 1 23 758 781 758 781 0.97 13 15 1.2e-07 2.9e-05 26.3 0.3 2 23 788 809 787 809 0.97 14 15 9.7e-06 0.0024 20.2 0.7 1 23 815 837 815 837 0.98 15 15 7.2e-07 0.00018 23.8 0.3 1 23 843 865 843 865 0.98
Sequence Information
- Coding Sequence
- ATGCTGTACGGTTCCGAATTTCTGCCAAATCACTTTACTAACCATTTTTTCTTTCTGAATTTCAGGGACTCACGGCGCTTTGTCTTCCAGAAGAAACTGATCAAGCTACCACTTAAGGTCACTGAAAAAGTAGCCGCAGCTGCTGCAAAGTTTGTCTCGGAGCAAGCAACAACTCCCGAACCCGAGGTGAAGCTTGAGCCTCCGGAGAACAACAACGACTTCGAGGAGGTGTCAATCGATGGCAGCGATTACAAATCTGACACTTCTACGCACCCGTCTCGGACGAAAGCGGCAACAGCGAGCGGCAGCAACTCCGACGAAATCGTCGTGTTCATGTGCAAGGCGTGTAAGGTGTACTTCCCTCTGCGTAGCATGCTGGTCCAACACGCAGAGAAGGTTCACGGCAGTCTGATAAAGAAAAAACCGTCGCTGCGGCAGTCCATGACGATCGCGAAAAAGCAGAAACCGGCAGTAACTATCGTCAAAAAGCTCGTGCAGGTGAACCAAAAGGAGCTCGAGAAGTACAAACCgtcaaaaatagttgttattAAACCTTCGAGTCCAGTAACAGATTCGACGAAAACAAAGAAGCCTGGCTTTGTAACCGTGACGAAGACGCAAAAAGCGAAGTCGAGCACGCCGAAGTCTAAGAAGCCCGAAATTGATGATCTGGGCACGGTATACTTCGACGGCTACTGCAGACTTAAGAGCGGCAAATACGTGTGCAATTTCTGCGAATACGAGTCCTTCGTGCGCACGACTGTCTCCTCGCACTCGAAGCGCAAACATGCTGAGGCGTGGTCTGCTGACATCATGGACGAGAATGCCTCCGCAGATCCGGAAAATGAAGAGTTCGAAGTGGAGAACATTGAATCCGAGGAAGAAGACGAGAACGCGGAAGAGTATGAATTAAACGTGGTTGAGGAAGAGGAAAATTTCGACTCAATAAAAGTTTGCCCGTGCTGTCCATTTAGCACAAATAGCTCGGTTGCTCACCAGGCTCACGTTAAGCGCCGACATCGTGACTTTTGGCTCAAGTCCTTAGCTAATAAAGTGGCCGCTCTCAAATCTGCCACCGAGATCAAGCAGTCACTACCACCGGGTATTCGCCAGTGTCAGCACTGCCCATTTCAGTCTAAGAATCGCTCGACTATCTACATGCACACGGTTCGCAAGCACGGACAAATGGTAAGCGAAAAACTTGAGGAAATCGAGGAACCCTTAGTTGAAGAAATCATCAATCCAATGGAGGTTGGAGAAGATGCCGGCATCGATGACTCGGAGGAGCTGGGTGAGGAGGGCGAGCTGCAAAAGTGCCCCTACTGCCCATTCGAGACTAAGGTGCTCTCGACGATAAGATCGCACATCGCTCGACGTCACCGCTACAAAGAGGCATCCAATCGGTTGAAAAAATCCGGATTAATTGCTAAAGCAAAGGCAAGCCCCCAACTGTACACTGGCTATGCTTGTTCGTTCTGCACTTTTGTGGCGGCGACGGTGTCTTCGATCAACCACCACACAACTCGCGAGCACTCGGGTGAGAAGCAGCCACTAAACGAGGTACCTGTCACCGAGTACGATTGCGACCAGTGTGATTTTAAGTCTAGGAACCGTAAGCACATGCAGATGCACATAAAGTCCATGCACACGGCTATAGCAAACGACGATGGTATGTACACCTGTCCCATGTGCTCGTACGAGACGCTGACTAACATGGGTTTGCAGCGTCACATTTCGATAAAGCATAACAAGCTGAGGCGTGACGCAGACTCGAAAATGATCAGGGAGGTCTACGAGTGCGATGAGTGCGAATACAACAGCCCGAATCTCAAATTGCTAGAGTGGCACAAACGGCAGCACATCACGTCTGGTGATGCCGAGAATAACGCTAATACGTTCTTCTGTAATGACTGCGATTTTAGCACCTGGACTAAGAACCAACTATTCGTACATATCAAGAGAAAGCACAGGGATAGTGAAGGAACTAAGCAGGATCTAGATCCGGATGAGCATAAGTTTGCCTGTGATCAATGCGATTATACGAGCAAGAGTAAGCATGTGATGAAGGTTCATGTTATAAGAAAGCATACAAATGAATATAATCACGAGTGCGAAATCTGCGGTAAGAAGTATAAAGTCAAAGCTGATCTAACGAATCATATAAGATTTCAGCACAGAGAACAGCCGATCATCTGTGACGTCTGTGGCAAGACTTGCAGAAATAGCAATTTGCTCTATTTGCATCAAAAGTTTGCGCACTACAAGCCAGATTTCGAGTGTCACATATGCCATCGTCGAATGGTCAGCCAGGCCAATCTAGATGAGCATATCTTAAAACAACATGAGCAAAGGGAAGATGTCGTGTGCGAGGAGTGCGGTAAAACATTCACGAGACAAGCTAGATTGAAGATCCACATGAGGATACACACCGGCGTTAAACCATACACGTGCAAGATCTGTTTCAAGGCTTTTGCGAGGAGGAATGGATTGAGACAACATTTGCTTATACATACCGGGCAGCGTCCGTACATCTGTGACATCTGCGGAAAAGCTTTTACCCAGAAGACAGGCTTGATCAGTCATAGGAAGAGTCATCCGGGCAACCATCCGCCCCTACCTAGAGTCACGATAGATCATGTACTGTCGGAGTTCCTTAACGAGGAAGAGGAAGAAgcttaa
- Protein Sequence
- MLYGSEFLPNHFTNHFFFLNFRDSRRFVFQKKLIKLPLKVTEKVAAAAAKFVSEQATTPEPEVKLEPPENNNDFEEVSIDGSDYKSDTSTHPSRTKAATASGSNSDEIVVFMCKACKVYFPLRSMLVQHAEKVHGSLIKKKPSLRQSMTIAKKQKPAVTIVKKLVQVNQKELEKYKPSKIVVIKPSSPVTDSTKTKKPGFVTVTKTQKAKSSTPKSKKPEIDDLGTVYFDGYCRLKSGKYVCNFCEYESFVRTTVSSHSKRKHAEAWSADIMDENASADPENEEFEVENIESEEEDENAEEYELNVVEEEENFDSIKVCPCCPFSTNSSVAHQAHVKRRHRDFWLKSLANKVAALKSATEIKQSLPPGIRQCQHCPFQSKNRSTIYMHTVRKHGQMVSEKLEEIEEPLVEEIINPMEVGEDAGIDDSEELGEEGELQKCPYCPFETKVLSTIRSHIARRHRYKEASNRLKKSGLIAKAKASPQLYTGYACSFCTFVAATVSSINHHTTREHSGEKQPLNEVPVTEYDCDQCDFKSRNRKHMQMHIKSMHTAIANDDGMYTCPMCSYETLTNMGLQRHISIKHNKLRRDADSKMIREVYECDECEYNSPNLKLLEWHKRQHITSGDAENNANTFFCNDCDFSTWTKNQLFVHIKRKHRDSEGTKQDLDPDEHKFACDQCDYTSKSKHVMKVHVIRKHTNEYNHECEICGKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICHRRMVSQANLDEHILKQHEQREDVVCEECGKTFTRQARLKIHMRIHTGVKPYTCKICFKAFARRNGLRQHLLIHTGQRPYICDICGKAFTQKTGLISHRKSHPGNHPPLPRVTIDHVLSEFLNEEEEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691392;
- 90% Identity
- iTF_00691392;
- 80% Identity
- -