Basic Information

Gene Symbol
ncor1
Assembly
GCA_030522745.1
Location
JAPYZB010009813.1:1283-15688[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.3 2.1e+04 -2.2 0.1 31 39 608 617 605 618 0.80
2 2 7e-09 2.3e-05 26.5 0.0 3 43 765 805 764 808 0.96

Sequence Information

Coding Sequence
CCCCAGCAGAGCTACGGTTCAAGCTCACGTCAAGCGGTGTCTCCGCGGACGGTCGAGGGTAGCGGTGTCGGGGGCGGCGTCGGCGTCGCTGGCGCCGGCGGTGCCGCGGCGACcgcagccgcagcagcagcagcagcagcggcagcagcctCGTCGTCGGCTGGTGGCGGTGGAGCCGGGGGAGCTGGCGGGGGCGCTggcagcggcggcggtggcggcgtcGGCCCTGGCAGCCTCGTCGTCGTCGGTGGTGGCGGTGGCGGTGCGCCAGGGGCTGCCTCCGCgtcgtcgtcatcgtcgtcTGCATCATCCGCACGCTATCCCCCACagtcgcagcagcagcagcagcagcagcagcaacagcagcagcaaccacCACCGTTGCATCACTTCTATCACCCGCATTATCAGCAGCACCTGCATCACCAGTATCAGGTCGCGGCAGCAGCTGCAGCCGCCTCGGCAGGCAGCAGCGCCAGCTCGTCATCATCGCCGGGATCGTTGGCGATGAACAGTGGCCCGGCTGGCGGCCCTGGCCAGCCACCGCAGGGACTACAAGCCTCGTCCTCCGCCTCCTCAGCACGTGACCAGCACTCGCAGCAAGGTACCGATCTAAGCGGCCTCAACATCACGATAATGAACATCACGGTGCCGCCGGTGGTGCCGGTGCCTGCAGGCCTGCGCTTTGTCCATCCGTACCTGCCCCCACCGCCGCCTCATCCGCACCCGCCTCCACAGTCTGTCGCCTCGGTGGCCCAAGTCGCCCAGGTCGCCTCGTCCAATTCGGCCTCGCCCGTCTCGGCCTCCTCGGGTCCTACGTCCATCGTTCAACAGCAAGTCAGCAGGCAGCAGCACCCGCCCTCGGCGCCTTCGCCCGCGTCCAGCGCCGCAGCCGCCTATACGAGGGACGTTTATCGCAACGCAAGTCCTAATGTGAACGAGCGAGTGGCGATAAGCGTAAGCAGTAGTCCAGTGTCCTCGCAGGTGGTCGGGGTTGGTAGCGACTACGTGGTGAGCAGTCGAGGTGGCGACCGACCGCGCATTTCCCTCTTGCCGGCGCCAGCTTCGATAGCTCCGGCAGCCTCGCCGACCGCACCCACAGACTATCACGCAGCGGCAGCCGCCGCGCGAAACAGTCGTAGCGGACCCACCGTGGCCCCGGCTGGTATCCTGGCCATGCAGCCGCAGGACTACCGCCCTAGTCCCGTTGACATGGCGCAGCttcagcaacaacagcagcagcaggatgCACCACCTTTCAAAAAGATCCGCCTCGGCGCGCCTGCCCAGCAACTGCCACCAActcaacagcagcagcagtcgaTCTCACAAACAGAGTGCCACCAGAGGCTCAGTAGCCAACAAGATGCGCTGATCAAGCAAAAGCAACCAGTACAGCAGCTGCAGCCACTCAGGATAGATACGAGGACGACGGGTGCATATACGCCACAGACGGAAGCAATTTCGCCGACTCTTCCTGAGCCTAATACGCAAGAGGACGCGGCATTTAGGAGCACCAAAGATGATCTTCTTCAGCAAATAGCCAAGGTCGACCGAGAAATCGCGAAAAGGGAAACGCAAATTAGCAAGCTTCGGAAAAAACTTAAAGAGTTGGAAGAAGTAGCTAAACAACCCTTATTAGAACCCGGTAATAAACGACCTGTGGAAGAAGCATCTCTGCAACCTAAGCATCAGTCacttgtacaaaaaatttatgctGAGAATAGGaaaaaatcagAGGAGGCGCACAGGTTGCTGGACAAGTTAGGGCCGAAGGTGAAACTGCCACTGTATAACCAACCTTCGGATACGAGCGTGTATCAAGAAAATCGTACGAGGCACCAATGCATGAAATCGCGCCTTGTGGCAAGACTTCGCAAGGAACACGCGGAGCGTGCTTCCCTCCACCGTCAGCAATCACAGACTTACGCGATACTCGTACAGGAGTGGCATCGTAAGGTCGAAAAGCTGGAGGCGACACAGAAACGTAAAACGAAGGAGGCAAAGAATCGCGAGTTCTTTGAGAAGGTCTTCCCAGAGCTTCGGAAGCAGCGAGAAGACAAGGAGCGCTTTAACAGGGTTGGTGCTCGTATCAAGAGCGAGGCCGACTTGGAAGAAATTATGGATGGTCTGCAAGAGCAGGAGATGGAGGATAAAAAGATGCGCTCGTACGCTGTGATCCCGCCGCTGCTGCTTGATGCAAAACAGCGGAAAATCGCATTTCAGAATCGTAATGGACTACTGCAACCAGAGGAGCTCGAGGCGCTGCACAGCGAAAGGAAGCTGATCAACGTCTGGAGCCAGACGGAGCACGAAATGTTCAAGGAAAAATATCTTCAGCATCCCAAGAACTTCGGAGCGATAGCCCAGTCGTTCGAGCACAAGTCTGTAGCGGACTGCGTGCATCACTACTACCTCACTAAGAAAGCGGAAAATTATAAGCAGCTACTCCGAAAGTCGAGGCGTACGCGTAGTTCTCGAAACAATCCTAATAATAAGGTAAATAATAGTAACTCCACTATCGGACCTATAGATATATTAACGACGGGAGTAACGACGAGGCTGCAGCGTGAGCAGCAACAAAAAACCCAAGAGAACCCTCAAAGTAGTTCAGCGGCGTCGAGTAGCGGCGCCAACGCGCCTACGACGTCGACCACGTCTACGACCGCGTCATCGTCCTCGTCGACGGCGGTGGCGAGCAGCTCCGTGGGTACGACGCCAGCAGGCGCAGCGAGCTCGTCCGGTGGCGGCAGCGCCGCTGGAGCGAATTCAACCTCGGAGCCCtcgacgacgacggcgacgacgacgatAACATCGTCGGCGTCGGTAACGGCGTCAGCATCCGTCCCGAGTATCAGCGCGACGACAACGACGTCGAGCGTACTCACGACGACGTCAACGTCGTCAGCCAGCTCCAAGGACGCCCGCGAGGCGAACAAAGAAAGTAAGGAGATCAAGCAGGAGCCCAAAGACTCGATACTTAAAGATATCAAAGAAGAGTCGCAATCAAGCTCTGAAACACTCTCTAGTAGAGAAATCAAGGTCGAGAACAAGGGAGCTCTGTCCTCGTCGTCCAACACAAGCGCGACGAACACCACCGCGCAGAGCAGCAGCCTCCAGCTagaacagcagcagcaaaaagataagaaaaaggGCGCAGGAATCACGGGCGGCTCCAGTGCCACCAGCAGGTCGAAGGATAAGAAGAAGGAGAACCATGCGACGCCTATGGAAACTAGCGACGAGGAAGCGCAAGATAATAGGGAAATGGCGTAG
Protein Sequence
PQQSYGSSSRQAVSPRTVEGSGVGGGVGVAGAGGAAATAAAAAAAAAAAASSSAGGGGAGGAGGGAGSGGGGGVGPGSLVVVGGGGGGAPGAASASSSSSSASSARYPPQSQQQQQQQQQQQQQPPPLHHFYHPHYQQHLHHQYQVAAAAAAASAGSSASSSSSPGSLAMNSGPAGGPGQPPQGLQASSSASSARDQHSQQGTDLSGLNITIMNITVPPVVPVPAGLRFVHPYLPPPPPHPHPPPQSVASVAQVAQVASSNSASPVSASSGPTSIVQQQVSRQQHPPSAPSPASSAAAAYTRDVYRNASPNVNERVAISVSSSPVSSQVVGVGSDYVVSSRGGDRPRISLLPAPASIAPAASPTAPTDYHAAAAAARNSRSGPTVAPAGILAMQPQDYRPSPVDMAQLQQQQQQQDAPPFKKIRLGAPAQQLPPTQQQQQSISQTECHQRLSSQQDALIKQKQPVQQLQPLRIDTRTTGAYTPQTEAISPTLPEPNTQEDAAFRSTKDDLLQQIAKVDREIAKRETQISKLRKKLKELEEVAKQPLLEPGNKRPVEEASLQPKHQSLVQKIYAENRKKSEEAHRLLDKLGPKVKLPLYNQPSDTSVYQENRTRHQCMKSRLVARLRKEHAERASLHRQQSQTYAILVQEWHRKVEKLEATQKRKTKEAKNREFFEKVFPELRKQREDKERFNRVGARIKSEADLEEIMDGLQEQEMEDKKMRSYAVIPPLLLDAKQRKIAFQNRNGLLQPEELEALHSERKLINVWSQTEHEMFKEKYLQHPKNFGAIAQSFEHKSVADCVHHYYLTKKAENYKQLLRKSRRTRSSRNNPNNKVNNSNSTIGPIDILTTGVTTRLQREQQQKTQENPQSSSAASSSGANAPTTSTTSTTASSSSSTAVASSSVGTTPAGAASSSGGGSAAGANSTSEPSTTTATTTITSSASVTASASVPSISATTTTSSVLTTTSTSSASSKDAREANKESKEIKQEPKDSILKDIKEESQSSSETLSSREIKVENKGALSSSSNTSATNTTAQSSSLQLEQQQQKDKKKGAGITGGSSATSRSKDKKKENHATPMETSDEEAQDNREMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01379941;
90% Identity
iTF_00690122; iTF_00691033;
80% Identity
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