Basic Information

Gene Symbol
ncor1
Assembly
GCA_030522685.1
Location
JAPYZA010000514.1:14828-27795[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6 1.7e+04 -2.2 0.1 31 39 626 635 623 636 0.80
2 2 6.6e-09 1.9e-05 26.4 0.0 3 43 798 838 797 841 0.96

Sequence Information

Coding Sequence
atgaaagaggcagaaataataataaatatttatgttgatTGCAGGCCCCAGCAGAGCTACGGTTCAAGCTCACGTCAAGCGGTGTCTCCGCGGACGGTCGAGGGTAGCGGTGTCGGGGGCGGCGTCGGCGTCGCTGGCGCCGGCGGTGCCGCGGCGACcgcagccgcagcagcagcagcagcagcagcctcgtCGTCGACTGGTGGCGGTGGAGCCGGGGGAGCTGGCGGGGGCGCtggcagcggcggcggtggcggcgtcGGCCCTGGCAgcctcgtcgtcgtcggtgGTGGCGGTGGCGGTGCGCCAGGGGCTGCCTCCacgtcgtcgtcatcgtcgtctGCATCATCCGCGCGCTATCCCCCACAGtcacagcaacagcagcagcagcagcagcagcagcagcagcatcaacaacagcagcaaccACCACCGTTGCATCACTTCTATCACCCGCATTATCAGCAGCACCTGCATCACCAGTATCAGGTCGCGGCAGCAGCTGCAGCCGCCTCGGCAGGCAGCAGCGCCAGCTCGTCATCATCGCCGGGATCGTTGGCGATGAACAGTGGCCCGGCTGGCGGCCCTGGCCAGCCACCGCAGGGACTACAAGCCTCGTCCTCCGCCACATCAGCACGTGACCAGCACTCGCAGCAAGGTACCGATCTAAGCGGCCTCAACATCACGATAATGAACATCACGGTGCCGCCGGTGGTGCCGGTGCCTGCAGGCCTGCGCTTCGTCCATCCGTACCTGCCCCCACCGCCGCCTCATCCGCACCCGCCTCCACAGTCTGTCGCCTCGGTGGCCCAAGTCGCCCAGGTCGCCTCGTCCAACTCGGCCTCGCCCGTCTCGGCCTCCTCGGGTCCTACGTCCATCGTTCAACAGCAAGTTAGCAGGCAGCAGCACCCGCCCTCGGCGCCTTCGCCCGCGTCTAGTGCCGCGGCCGCCTATACGAGGGACGTCTATCGCAACGCAAGTCCTAATGTGAACGAGCGAGTGGCGATAAGCGTAAGCAGTAGTCCAGTGTCCTCGCAGGTGGTCGGAGTTGGCAGTGACTACGTGGTGAGCAGTCGAGGCGGTGGCGACCGACCGCGCATTTCCCTCTTGCCGGCGCCAGCTTCGATAGCTCCGGCAGCCTCGCCGACCGCACCCACAGACTATCACGCAGCGGCAGCCGCCGCGCGCAACAGTCGTAGTGGTCCTACCGTGGCCCCGGCTGGTATCCTGGCCATGCAGCCGCAGGACTACCGCCCTAGTCCCGTTGACTTGGCACAACttcaacaacagcagcagcaggatGCACCACCTTTCAAAAAGATCCGCCTCGGCGCGCCTGCTCAGCAACTGCCACCAActcaacaacagcagcagcagtcgaTCTCACAAACAGAATGCCACCAGAGGCTCAGTAGCCAACAAGATGCGCTGATCAAGCAAAAGCAGCCAGTACAGCAGCTGCAGCCACTCAGGATAGATACGAGGacGACGGGTGCATATACGCCACAGACGGAAGCAATTTCGCCGACTCTTCCTGAGCCTAATACACAAGAGGACGCGGCATTTAGAAGCACCAAAGATGATCTTCTTCAGCAAATAGCCAAGGTCGACCGAGAAATCGCGAAAAGGGAAACGCAAATCAGCAAGCTTCGGAAAAAACTTAAAGAGTTGGAAGAAGTAGCTAAACAACCCTTAGATCCCGGTAATAAACGACCTGTGGAAGAAGCATCTCTGCAACCTAAGCATCAGTCacttgtacaaaaaatttatgccGAGAATAGGaaaaaatcagAGGAGGCGCATAGGTTGCTGGACAAGTTAGGGCCGAAGGTGAAACTGCCACTGTATAACCAACCTTCGGATACGAGCGTGTATCAAGAAAATCGTACGAGGCACCAATGCATGAAATCGCGCCTTGTGGCAAGACTTCGTAAGGAACACGCGGAGCGTGCTTCCCTCCACCGTCAGCAATCACAGACTTACGCGATACTCGTACAGGAGTGGCATCGTAAGGTCGAAAAGTTGGAGGCGACACAGAAACGTAAAACGAAGGAGGCAAAGAATCGCGAGTTCTTTGAGAAGGTCTTCCCGGAGCTTCGGAAGCAGCGAGAAGACAAGGAGCGCTTTAATAGGGTTGGTGCCCGTATCAAGAGCGAGGCCGACTTGGAAGAGATTATGGATGGTCTGCAAGAGCAGGAGGAAGAGTTGTCGACCGAGTTAAAAAATGCGTTGAAAGCCCGTCAGATGGAGGACAAAAAGATGCGCTCGTATGCTGTGATCCCGCCGCTGCTGCTTGATGCAAAACAGCGGAAAATCGCATTTCAGAATCGTAATGGACTACTGCAACCAGAAGAGCTCGAGGCGCTGCACAGCGAAAGGAAGCTGATCAACGTCTGGAGCCAGACGGAGCACGAAATGTTCAAGGAAAAATATCTTCAGCATCCCAAGAACTTCGGAGCCATAGCCCAGTCGTTCGAGCACAAGTCTGTGGCGGACTGCGTGCATCACTACTACCTCACTAAGAAAGCGGAAAATTATAAGCAGCTACTCCGAAAGTCGAGGCGTACGCGTAGTTCTCGAAACAATCCTAATAATAAGGTAAATAATAGTAACTCCACTATCGGACCTATAGATATATTAACGACAGGAGTAACGACGAGGCTGCAGCGTGAGCAGCAACAAAAAACCCAAGAGAACCCTCAAAGTAGTTCAGCGGCGTCGAGTAGCGGCGCCAACGCGCCTACGACGTCGACGACGTCTACGACCGCGTCATCGTCCTCGTCGACGGCGGTGGCGAGCAGCTCCGTGGGTACGACGCCAGCAGGCACGGCGAGCTCGTCCGGGGGCGGCAACGCCGCTGGAGCGAATTCAACCTCGGAGCCctcgacgacgacggcgacgtCGACGATAACATCGTCGGCGTCGGTAACGGCGTCAGCATCCGTCCCGAGTATTAGCGCGACGACAACGACGTCGAGCGTACTCACGACGACGTCAACGTCGTCAGCCAGCTCCAAGGACGCCCGCGAGGCGAACAAAGAAAGTAAGGAGATTAAGCAGGAGCCCAAAGACTCGATACTTAAAGATATCAAAGAAGAGTCGCAATCAAGCTCTGAAACACTCTCCAGTAGAGAAATCAAGGTCGAGAACAAGGGAGCTCTGTCCTCGTCGTCCAACACAAGCGCGACGAACACCACCGCGCAGAGCAGCAGCCTCCAGCtagaacagcagcagcaaaaagataagaaaaaggGCGCAGGAATCACGGGCGGCTCCAGTACCACCAGCAGGTCGAAAGACAAGAAGAAAGAGAACCACGCGACGCCTATGGAAACTAGCGACGAGGAAGCGCAAGATAATAGGGAAATGGCGTAG
Protein Sequence
MKEAEIIINIYVDCRPQQSYGSSSRQAVSPRTVEGSGVGGGVGVAGAGGAAATAAAAAAAAAASSSTGGGGAGGAGGGAGSGGGGGVGPGSLVVVGGGGGGAPGAASTSSSSSSASSARYPPQSQQQQQQQQQQQQHQQQQQPPPLHHFYHPHYQQHLHHQYQVAAAAAAASAGSSASSSSSPGSLAMNSGPAGGPGQPPQGLQASSSATSARDQHSQQGTDLSGLNITIMNITVPPVVPVPAGLRFVHPYLPPPPPHPHPPPQSVASVAQVAQVASSNSASPVSASSGPTSIVQQQVSRQQHPPSAPSPASSAAAAYTRDVYRNASPNVNERVAISVSSSPVSSQVVGVGSDYVVSSRGGGDRPRISLLPAPASIAPAASPTAPTDYHAAAAAARNSRSGPTVAPAGILAMQPQDYRPSPVDLAQLQQQQQQDAPPFKKIRLGAPAQQLPPTQQQQQQSISQTECHQRLSSQQDALIKQKQPVQQLQPLRIDTRTTGAYTPQTEAISPTLPEPNTQEDAAFRSTKDDLLQQIAKVDREIAKRETQISKLRKKLKELEEVAKQPLDPGNKRPVEEASLQPKHQSLVQKIYAENRKKSEEAHRLLDKLGPKVKLPLYNQPSDTSVYQENRTRHQCMKSRLVARLRKEHAERASLHRQQSQTYAILVQEWHRKVEKLEATQKRKTKEAKNREFFEKVFPELRKQREDKERFNRVGARIKSEADLEEIMDGLQEQEEELSTELKNALKARQMEDKKMRSYAVIPPLLLDAKQRKIAFQNRNGLLQPEELEALHSERKLINVWSQTEHEMFKEKYLQHPKNFGAIAQSFEHKSVADCVHHYYLTKKAENYKQLLRKSRRTRSSRNNPNNKVNNSNSTIGPIDILTTGVTTRLQREQQQKTQENPQSSSAASSSGANAPTTSTTSTTASSSSSTAVASSSVGTTPAGTASSSGGGNAAGANSTSEPSTTTATSTITSSASVTASASVPSISATTTTSSVLTTTSTSSASSKDAREANKESKEIKQEPKDSILKDIKEESQSSSETLSSREIKVENKGALSSSSNTSATNTTAQSSSLQLEQQQQKDKKKGAGITGGSSTTSRSKDKKKENHATPMETSDEEAQDNREMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01379941;
90% Identity
iTF_00691887;
80% Identity
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