Basic Information

Gene Symbol
stc
Assembly
GCA_030522685.1
Location
JAPYZA010013688.1:407-4539[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1 6.2e+04 -4.2 1.6 15 19 386 390 385 390 0.81
2 16 0.061 3.8e+03 -0.2 0.1 4 10 419 425 418 426 0.94
3 16 1.1e-06 0.069 14.9 10.9 4 18 436 450 434 451 0.94
4 16 0.55 3.4e+04 -3.3 1.5 6 10 477 481 476 481 0.90
5 16 2.6e-06 0.16 13.7 14.3 1 18 487 504 487 505 0.93
6 16 0.15 9.2e+03 -1.5 2.3 1 10 514 523 514 523 0.89
7 16 0.3 1.9e+04 -2.4 0.9 6 10 533 537 532 537 0.89
8 16 2.7e-10 1.7e-05 26.4 15.4 1 18 543 560 543 561 0.98
9 16 1.7e-05 1 11.1 12.2 4 18 608 622 601 623 0.86
10 16 0.69 4.3e+04 -3.6 2.0 5 10 652 657 652 657 0.93
11 16 0.0056 3.5e+02 3.1 11.2 1 11 663 673 663 685 0.88
12 16 3.1e-11 1.9e-06 29.5 14.0 1 19 690 708 690 708 0.98
13 16 0.72 4.5e+04 -3.6 0.6 6 10 737 741 736 742 0.68
14 16 1 6.2e+04 -5.8 9.8 10 19 755 765 745 765 0.83
15 16 1.5e-06 0.093 14.5 15.2 1 16 801 816 801 827 0.85
16 16 4.1e-05 2.6 9.9 13.7 1 19 833 852 833 852 0.97

Sequence Information

Coding Sequence
ATGGGGCCCCCAGAAACACACCTAAATACCACGAACAATCAATTGCCCTGTTTTTATGAAGATAATAAAGTACTAGCTCAGCAAGTACAACcaacttattattataataaaagcaaCAACTATCAAAACAGTGGTAAACGTAAAGATACTAATAAAACTTATGAAGTTTCTAACATAGTGGAGCACTCAAATTTACATGCCACTGCAAGTGAATTTGTACCAAACCAAAATAAATTGGATCGAGGAACTAATGCAAATGTAAATAGAAATAGCAGAAATCGAAGTAATAATGATTATCAAAGTTACAATAATGATCAAGCATCTAACAATGTCTTCTTTGatgataataaagtaaagtatAATGATAGGAAATTTGAAAGTAAAAGAGATGCTGGCAGAAGGTGGAGGGATACACCAAATAACCAATACCAGAAAGATGACAAAAAAGATTATGGGAGAAATCAAAATTCAAGAAGATATCAGAATGATAAATATAGTCATAATAAGAATTTCTCTGACAAATCAAGAAACAATCGATCAGGAAAAGACGATAGTCAAATTGCTACTTCTGAATCCAATGCAAACAATGAGCAGGACAGAACATCGAATGTACAAGATAATTCCAATAACAGTAATGTTAATCTACCTTTAGAAACTGAAACTGCCCAATCTTCAACTTCACAATCTACGAAAAATTCGAAAACATTCTCAAATAATAGTCGCGGTGACAGATACTATGATAAAAAAGATCGTTATAATCCTAGAGATCCAAGGGATAGAAGAAGTAATTATCCAGAGCATAATGGATACAATAGAAACAACTAtaatagagaaaataaatttgaaagaagGGATAATAGGAGTGGAGAAAATCGCGATAAAGATACTGATTGGAGGCAAAGAACAAATGATAGTGGAAATAAAAGCACTTTGCCAAAACGTCCTTACCAAAAGAAATATGAACCagatgatgATGCCAGTCAAAGAGAAAGATTGACAGAGCAATTGAATCGTGGTCAGTTAGAGTGTTTAGTTTGTTGTGAATCTATTCGACAGGTTGATTTTGTCTGGTCATGCAAAAATTGCTATCACGTTTTGCACTTGAAATGTGTGCAAAAATGGGCCAAATCGTCACAAGACGAAAATGGTTGGCGCTGTCCCGCCTGCCAAAACGTAACATCAGAGGTGCCATCGGACTATGAGTGTTTTTGCGGTAAGACTCGTGTCCCCGAATGGAATCGCCGTGACACGGCCCACTCATGTGGCGAAATTTGTGGTCGAGCCAGGCTCGACACCAACTGTGTGCATAAGTGCACATTGCTCTGCCATCCGGGCTCTTGCCCAGCCTGCGTGGCTATGGTCACAAAATCATGTGGTTGTGGCCGCACGTCCCAAACGCAGAAGTGCAGTGCCGGACCGCTGCTCCAATGCGAAGAGATCTGCGATCGTGTGCTCAACTGCGTCATCCACAAATGTGAAACAAAGTGTCATCACGGTAGCTGTGAGCCGTGTGATAAAATCATTAAGCAAGaatgcTACTGTGGAAAGCACAACCGCGAAAAAACTTGTGTTCTAGATTTACCGCCATTGTATTCATGTCAAAACGTTTGTGAGAAAGTGCTAGATTGTGGTAATCATAAGTGTAAGGAAATTTGCCATCCAGGCGAGTGTGGACCTTGTGTTTTGAAACCCGAAACTATCACACATTGCTGCTGCGGACAAACCCCTTTGAGTGTTAAGAGAGAAAGTTGTTTGGACCCCATTCCAACTTGTGATAAAATGTGTAGCAAGCGGTTAAAGTGTGGTCAACCAAGTAACCCTCATATCTGCCAAGCAAACTGCCACGAAGGCAACTGCCCTGAATGCGATTTGACCACGAAAGTAAAGTGCCGCTGCGGTCACATGGACAAGGAAATCCCTTGCAGAGAACTGACAACCAAGGCTGATGACGCTCGTTGCGAGAAGAAATGTACGAAAAAACGTTCCTGTGGCAAGCACAAATGCAATCAAATGTGTTGCATCGACATCGAACACATATGCCCGCTTCcatgctcaaaaaatttgaGCTGTGGTCGGCACAAATGTGAACAAACATGTCACAAAGGAAGATGTCAGCCGTGTTGGCGCAGCAGCTTCGACGAGCTCTACTGCGAGTGCGGCGCCGCTGTGATCTATCCGCCCGTCCCTTGCGGTACTCGGCGACCTGCCTGCGATAAACCCTGCTCACGTGAGCATCCTTGCAATCACGAGGTTCTGCACAACTGCCACAGCGATCCAAACTGCCCGCCTTGCACCGTGCTCACGCAAAAGTGGTGCTACGGAGAGCACGAGCTGCGCAAAGCCGTACCTTGTTACGTGAACGAGGTTTCCTGCGGTATGCCCTGCAACAAACCCATTTCCTGCGGCCGGCACAAGTGCATACAGCCCTGTCACCCGGGCGTCTGCGAGAAGCCGGGCCAGGTTTGCCAACAGCCCTGCACTGTGCCCAGGGAGTTGTGCGGGCACATATGTGGGGCGGCTTGTCACGAGGGCAAGTGCCCCGATACCCCCTGTAAGGAAATGGTCAAGGTAACATGCCAATGCGGAAATAGAACCATGTCTCGTGTATGCGCGGAGAACGCTCGAGATTTCCAGAGAATAGCCAGCGGAATTCTGGCGAGTAAAATGGCGGACATGCAGCTCGGTATGTCTGTCGACCTTGAGGAGGTCTTTGGTCAAGGCGCCAAGAAGCAGAATCAATTAAAGACTCTTGAGTGTAACGAGGACTGTAAGATGATCGAGCGCAATCGGCGCCTTACACTTGGCCTACAGATCGTCAATCCTGACCTTAGCGGCAAGCTTCTGCCCAAGTACAGCGAATACATGAAACAGCTTGGCAAAAAGGAGCCGGCTTTCAGTCAGATGGTGCACGACAAGCTCACTGAGCTCGTGCAGTTGGCCAAGACCTCCAAACAAAAATCGCGAAGCTATTCGTTCGAAGTCATGAATCAACATAAAAGGCATTTCGTACACGAATATTGCGAGCACTTTGGATGCGAGAGCCAAGCTTATGATCAGGAACCTAAGCGTAACGTCGTGGCTACTGCGGTTAAAGATAAAtgCTGGTTACCAAGTTACAGTTTATTAGAATTGTTGGCAAGAGAAAACGGTCAACGAAAAGTACCAAGACCAATGTTAAATAAGCCAACATTGAATAGCACTACTGAAAGgaGCATGGAATCTTTGACACTGAATACAAACAGTCTCAAAACTCTGCCTACGACTTCGACCTCACCGCCGAAGTCTCCAGAACCTGAAatagattattttaactataaaggttga
Protein Sequence
MGPPETHLNTTNNQLPCFYEDNKVLAQQVQPTYYYNKSNNYQNSGKRKDTNKTYEVSNIVEHSNLHATASEFVPNQNKLDRGTNANVNRNSRNRSNNDYQSYNNDQASNNVFFDDNKVKYNDRKFESKRDAGRRWRDTPNNQYQKDDKKDYGRNQNSRRYQNDKYSHNKNFSDKSRNNRSGKDDSQIATSESNANNEQDRTSNVQDNSNNSNVNLPLETETAQSSTSQSTKNSKTFSNNSRGDRYYDKKDRYNPRDPRDRRSNYPEHNGYNRNNYNRENKFERRDNRSGENRDKDTDWRQRTNDSGNKSTLPKRPYQKKYEPDDDASQRERLTEQLNRGQLECLVCCESIRQVDFVWSCKNCYHVLHLKCVQKWAKSSQDENGWRCPACQNVTSEVPSDYECFCGKTRVPEWNRRDTAHSCGEICGRARLDTNCVHKCTLLCHPGSCPACVAMVTKSCGCGRTSQTQKCSAGPLLQCEEICDRVLNCVIHKCETKCHHGSCEPCDKIIKQECYCGKHNREKTCVLDLPPLYSCQNVCEKVLDCGNHKCKEICHPGECGPCVLKPETITHCCCGQTPLSVKRESCLDPIPTCDKMCSKRLKCGQPSNPHICQANCHEGNCPECDLTTKVKCRCGHMDKEIPCRELTTKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICPLPCSKNLSCGRHKCEQTCHKGRCQPCWRSSFDELYCECGAAVIYPPVPCGTRRPACDKPCSREHPCNHEVLHNCHSDPNCPPCTVLTQKWCYGEHELRKAVPCYVNEVSCGMPCNKPISCGRHKCIQPCHPGVCEKPGQVCQQPCTVPRELCGHICGAACHEGKCPDTPCKEMVKVTCQCGNRTMSRVCAENARDFQRIASGILASKMADMQLGMSVDLEEVFGQGAKKQNQLKTLECNEDCKMIERNRRLTLGLQIVNPDLSGKLLPKYSEYMKQLGKKEPAFSQMVHDKLTELVQLAKTSKQKSRSYSFEVMNQHKRHFVHEYCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLELLARENGQRKVPRPMLNKPTLNSTTERSMESLTLNTNSLKTLPTTSTSPPKSPEPEIDYFNYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00080875;
80% Identity
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