Basic Information

Gene Symbol
stc
Assembly
GCA_017163975.1
Location
JAFFSR010000280.1:203743-210314[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3 1.1e+05 -4.3 1.6 15 19 482 486 481 486 0.81
2 16 0.2 7.6e+03 -0.4 0.1 4 10 515 521 514 522 0.94
3 16 7.4e-07 0.028 17.0 13.4 4 19 532 547 530 547 0.93
4 16 1.8 6.9e+04 -3.4 1.5 6 10 573 577 572 577 0.90
5 16 2e-07 0.0075 18.8 16.3 1 18 583 600 583 601 0.98
6 16 0.33 1.3e+04 -1.0 1.7 1 10 610 619 610 619 0.90
7 16 2.2 8.3e+04 -3.7 0.6 6 10 629 633 628 633 0.88
8 16 3.1e-09 0.00012 24.6 13.2 1 18 639 656 639 657 0.98
9 16 8.8e-05 3.4 10.4 12.0 4 18 704 718 697 719 0.86
10 16 2.3 8.6e+04 -3.7 2.0 5 10 748 753 748 753 0.93
11 16 0.02 7.7e+02 2.8 11.3 1 11 759 769 759 781 0.88
12 16 7.6e-10 2.9e-05 26.5 13.4 1 19 786 804 786 804 0.98
13 16 2.6 9.8e+04 -3.9 0.6 6 10 833 837 832 838 0.72
14 16 3 1.1e+05 -4.8 8.9 10 19 851 861 840 861 0.80
15 16 1.9e-05 0.73 12.5 14.2 1 16 897 912 897 923 0.85
16 16 0.00018 7 9.3 13.8 1 19 929 948 929 948 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGATGGTTCATATCCAGAGCCAGATGGATCCAATTATTATGTTAATTCTAATAGAAATCATGCACAGACTAATGTTCCAATATGGGATTACTATCTCCAAAATGCAAATGACAGTTATACTCAAAATACATCAACATCATATCCAATTGATTCGTCAATGGTCTTCGAACAGAGTACACCCAATTTCTACAATCACGTCGACAGAAATGCCATTCCTACTTCAATGCCAAATGTAGCAACAACTAATGTATACTCaaataatggaattcaaaatgTATCTCAAaagattcataTGGGGTCATCACAAACACAATTCAATTCCACTAATAATCAGTTGCCCTGCTTCTATGAAGATAATAAAGTTCTGACTCAGCAAGTACCATCTCATTATTATAATAGAAGCAATAACTATCAAAACAATGGCAAACGCAAAGAAGGTAATAAGACTTATGAAGTATCTGATAtagttgaaaattcaaatttacatGCTACTGCTAGTGAGTTTGTACCAAACCAAAATAAATTAGATAGAGGAAATACAAGTCAAAACAAAAATGGCAGAGGTCGACTCAACAATgattatcaaaattatgatGTAAATCAAGCATCTAACAATGTCTTCTTTGAAGACAATAGAATAAGGCATaatgatagaaaatttgaaaataaaagggATGCTGGTAGAAGGTGGAGGGATTCACAAAATAGCCAGTATTATAAAGATGAGAAAAAAGATTATGGTAGAAATCAAAATTCTAGAAGATATCAGAATGatagatataaccataaaaatttcCCTGAAAAACCAAGGAACAATCGTTCTGGAAAAGATGATACAGAAAGTGTTTCTTCTGAATCCAATCTGAATAATGAACAaggaaaaatattcaataatcaGCAAGATAATTCTAGCGATAGTAATGTTAATAAGTCTCcagaaagaaataatattcaatctTCTAAAAATTCAAAAGCATTCTCAAATAGCCGTGGAGACAGATATTATGATAGAAAAGAACGATACAATCCTAGAGATCCTAGAGATAGAAGAAGCAATTATCCCGAGCACAATGGTTATAATAGAAGTAATTATAATcgagaaaataaatatgatagaAGGGAAAACAGAAATAACCCTGCAGAAAATCGAGATAAAGAAATGACTGATTGGAGACAAAGAACAAATgataatggaaataaaaataatttactcaaAAGaacttatcataaaaaatatgaaccagatgATGCAGCAAGTCAACGAGAAAGGTTGACGGAGATACTCAACCGTGGACAACTGGAATGTTTAGTTTGTTGTGAATCTATTCGACAAGCTGACTATGTTTGGTCATGTAAAAATTGCTATCATGTTTTACATCTAAAATGTGTTCAAAAATGGGCTACATCGTCACAAGatgAAAGTGGTTGGCGTTGTCCAGCTTGTCAGAATGTAACATCAGAAGTGCCCTCTGAATACGAGTGTTTTTGTGGTAAGACAAAAGTACCAGAATGGAATCGTCGTGATACTGCACATTCTTGTGGTGAAATTTGTGGTCGTTCCAGACCTGATACTAATTGTGTGCATAAATGCACATTGCTTTGTCACCCGGGTTCATGCCCACCTTGTTCGGCTATGGTCACCAAATTTTGCGGCTGTGGACGCACATCccagacacaaaagtgtagcaCTGGCCCTCTTCTTCAATGTGAAGAAATTTGTGATCGCGTCTTAAACTGTGGTGTGCACAAATGTGAATCCAAGTGTCATCATGGCAGCTGCGAGCcatgtgataaaattattaaacaagaatgTTATTGTGGGAAACACAGCCGAGAAGAAACTTGTATCCTAAACTTATCACCATTTTATTCATGTGAAAATATTTGTGAAAAAGTGTTAGATTGTGGTAATCATATGTGCAAAGAAATTTGTCATTCAGGCCAATGTGGACCTTGTGTGTTAAAACCTCAATCTATTACACATTGTTGCTGTGAACAGACTCCTTTAACTATTAAAAGAGAAAGTTGTTTAGATCCCATTCCAACTTGTGATAAAATGTGTAGTAAACGACTAAAATGTGGCCAACCAAGTAATCCTCATATCTGCCAAGTAAACTGCCATGAGGGTGACTGCCCTGAATGCGATTTGACCACAAAAGTAAAATGCCGCTGTGGTCACATGGACAAGGAAATCCCTTGCACAGAACTGACGACTAAGGCTGACGATGCTCGTTGTGagaaaaaatgtacaaaaaaacGTTCCTGTGGCAAGCACAAATGCAATCAAATGTGTTGCATTGACATTGAACACATATGTCCACTCCCTTGCTCCAAAACTTTAAGTTGTGGTCGGCATAAGTGTGAACAAacttgtcataaagGAAGATGCCAACAATGCTGGCGCAGTAGCTTCGACGAGCTGTACTGCGAGTGCGGAGCTGCGGTAATTTATCCGCCTGTACCTTGTGGTACTCGCCGCCCTGCCTGTGACAAGCCCTGCACACGTGAACATTCTTGTAATCATGAAGTACTACATAACTGCCACAGCGATCCTAACTGTCCACCTTGCACTGTTCTTACACAAAAATGGTGTTATGGTGAACATGAATTGCGCAAAGCTGTACCTTGCTATGTAAATGAAGTTTCTTGTGGTTTACCTTGTGGTAAAGCTATCTCTTGCGGACGACATAAATGTATAACACCCTGTCATCCTGGTGTCTGTGAGAAACCAGGACAGGTTTGCCAACAACCTTGCACCGTACCAAGAGAATTGTGCGGGCACATTTGTGGAGCATCTTGCCATGATGGCAAATGCCCAGATACACCCTGCAAGGAGATGGTCAAGGTCACATGCCAATGTGGACATAGATCTATGACTCGTATATGCGCTGAAAATGCTCGTGATTATCAAAGAATAGCTAGTGGAATTTTGGCCAGTAAAATGGCAGAGATGCAACTTGGTCATTCAGTCGATCTCGAAGAAGTTTTTGGTCAAGGAGCCAAGAAACAAAATCAACTTAAGACCCTCGAGTGCAATGAAGACTGTAAAATGATTGAAAGAAATAGACGCTTAACGCTTGGTTTACAAATTTCAAACCCAGATTTAAGTGGTAAACTTATGCCTAAATATAGCGAGCATATGAAACAGTGGGCCAAAAAGGATCCAGTCTTCTGTCAATCGGTTCACGACAAACTTACTGAGCTAGTTCAACTGGCTAAAACTTCAAAACAGAAATCACGTAGCCATTCATTTGAAGTTATGAATCGAGATAAACGACAGTTTGTACACGAATCCTGCGAGCATTTTGGTTGCGAGAGTCAAGCTTATGATCAGGAGCCTAAGCGCAATGTCGTCGCTACTGCGGTCAAagataaaTGCTGGTTACCAAGTTACAGTTTAATGGAAATAATGCAAAGAGAAAATGGTCAAAGGAAAGTGCCAGGACCAATGTTAAATAAATCGAAACTGAATGATGCTGCAGAAAGAAGCATGGATATGTCGTCACTAAACTCAAAGAAGAGTCTAAAATCTCTGCCTACAACTTCGGTTTCACCATCGAGATCTCCAGAACCTgaaatagattattttaattacaaaggTTGA
Protein Sequence
MATWDGSYPEPDGSNYYVNSNRNHAQTNVPIWDYYLQNANDSYTQNTSTSYPIDSSMVFEQSTPNFYNHVDRNAIPTSMPNVATTNVYSNNGIQNVSQKIHMGSSQTQFNSTNNQLPCFYEDNKVLTQQVPSHYYNRSNNYQNNGKRKEGNKTYEVSDIVENSNLHATASEFVPNQNKLDRGNTSQNKNGRGRLNNDYQNYDVNQASNNVFFEDNRIRHNDRKFENKRDAGRRWRDSQNSQYYKDEKKDYGRNQNSRRYQNDRYNHKNFPEKPRNNRSGKDDTESVSSESNLNNEQGKIFNNQQDNSSDSNVNKSPERNNIQSSKNSKAFSNSRGDRYYDRKERYNPRDPRDRRSNYPEHNGYNRSNYNRENKYDRRENRNNPAENRDKEMTDWRQRTNDNGNKNNLLKRTYHKKYEPDDAASQRERLTEILNRGQLECLVCCESIRQADYVWSCKNCYHVLHLKCVQKWATSSQDESGWRCPACQNVTSEVPSEYECFCGKTKVPEWNRRDTAHSCGEICGRSRPDTNCVHKCTLLCHPGSCPPCSAMVTKFCGCGRTSQTQKCSTGPLLQCEEICDRVLNCGVHKCESKCHHGSCEPCDKIIKQECYCGKHSREETCILNLSPFYSCENICEKVLDCGNHMCKEICHSGQCGPCVLKPQSITHCCCEQTPLTIKRESCLDPIPTCDKMCSKRLKCGQPSNPHICQVNCHEGDCPECDLTTKVKCRCGHMDKEIPCTELTTKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICPLPCSKTLSCGRHKCEQTCHKGRCQQCWRSSFDELYCECGAAVIYPPVPCGTRRPACDKPCTREHSCNHEVLHNCHSDPNCPPCTVLTQKWCYGEHELRKAVPCYVNEVSCGLPCGKAISCGRHKCITPCHPGVCEKPGQVCQQPCTVPRELCGHICGASCHDGKCPDTPCKEMVKVTCQCGHRSMTRICAENARDYQRIASGILASKMAEMQLGHSVDLEEVFGQGAKKQNQLKTLECNEDCKMIERNRRLTLGLQISNPDLSGKLMPKYSEHMKQWAKKDPVFCQSVHDKLTELVQLAKTSKQKSRSHSFEVMNRDKRQFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLMEIMQRENGQRKVPGPMLNKSKLNDAAERSMDMSSLNSKKSLKSLPTTSVSPSRSPEPEIDYFNYKG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
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