Basic Information

Gene Symbol
-
Assembly
GCA_030522685.1
Location
JAPYZA010003585.1:1-4295[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 4.1e+02 3.5 4.4 1 23 250 272 250 272 0.97
2 19 0.00026 0.053 15.7 1.0 1 23 321 343 321 343 0.98
3 19 0.029 6.1 9.2 0.4 1 20 397 416 397 418 0.94
4 19 0.023 4.8 9.6 0.9 2 23 459 480 458 480 0.97
5 19 0.00016 0.033 16.4 0.2 1 23 523 545 523 545 0.97
6 19 0.00041 0.085 15.1 0.1 1 23 551 573 551 573 0.98
7 19 0.00013 0.028 16.6 2.5 3 23 617 638 616 638 0.94
8 19 0.00056 0.12 14.6 0.3 2 23 646 668 645 668 0.96
9 19 0.0003 0.062 15.5 0.8 2 19 697 714 696 719 0.89
10 19 0.00012 0.026 16.7 1.2 1 23 750 772 750 772 0.93
11 19 0.33 68 5.9 0.2 2 20 835 853 834 853 0.95
12 19 0.0054 1.1 11.5 0.1 2 23 872 893 871 893 0.97
13 19 0.011 2.3 10.5 4.3 1 23 925 947 925 947 0.97
14 19 0.08 17 7.8 5.2 1 21 966 986 966 990 0.88
15 19 0.045 9.4 8.6 0.6 2 23 1048 1070 1047 1070 0.93
16 19 0.016 3.3 10.1 2.9 3 23 1099 1120 1097 1120 0.89
17 19 0.0014 0.29 13.4 0.1 1 23 1127 1151 1127 1151 0.96
18 19 0.0039 0.81 12.0 1.5 1 23 1156 1179 1156 1179 0.97
19 19 0.0091 1.9 10.8 0.4 3 23 1211 1232 1209 1232 0.95

Sequence Information

Coding Sequence
GACAAGCTGCCAACGCTAGTGTGTACAACATGTATCCAAAACATAAACCATTGGCACTTGTACAAAGATGTAGTTTCAAAATCACAAGAGAAACTTCAACAATGGTTATCAAAGCAGAATACCATTCAACCAATGGTAACTGTAAAAGAAGAACCAGTAGATGTAGAATTTCGAGATGAAAATGCTCAAACTGCAGCGAATGAATCTAAtatgACAAATCACGTTGCATCTGGTCCTGAAAATGtggaaattgaaaatgaaagcACGACTCCAGCCGTCACTGAGATAGCTAAAGCAGCTACTGTAGAAACAACTAAAAAATCACCAGAGcaatcatcaaaatttaacgAAAGGATTGATAAAGAGTACCCACTAGAGGTTCAAATAAAAACTGAACCTGTAGATACAGAAGATGAAGATGATTGTAATATAGATGTTGAATCTGTGAACAGTGGAGAACTTTTAATTAATCCTATGGCAGTAGCAGTAGCAAGCAATGCTAATAATGATAGGCATATGTCGAGATACCATGGCATTAACAATTTACCATCAAATAATGGTGCCAAACTGCAAGGACAGTTTACTTCAggtaaacaaaaatcaaaacttcTGCAACATCCAGATAATTTGGATCCTAATGCAGACACTCAAAGTAAAAGTAATCCAGATGAAGTAGAATTTGAACAGATGATAAAGACAGATCCACTAACACCAGTTCAAAGAAATATTATCGGCCAATTAAAGACTTTTTCTTGCTACTCTTGTCAATCTGTCTTTTTTGATCGGAGGCATACTTTGAATCATATAAGGCAGCATATGCCTGATCTACGCATCTACACTTGCATTGCTTGTCTTACTGAGTTTGCTGACAGGTCTATGTATAAACTTCATTGCGGCGCGTCATTTGAATGTGCTATGAAAATTGCTCTCGTGATTCCAAAAGTTggcaatgaaaaatattttacctgCAATATGTGTCTTCGCTCATTTAATAACCGACGGGAACTTCTGTCCCACTTGGCCTCGCACATTGGCAAAGAGGATCGACAAATGACTCAACCTTCAAGAGCACCGGTAAAGCTCAAGTCCATTTTACCATCACCAGCTTCTAAGAATGACTTAACCCCTTCCAAAAGATCCCCTTCAGGCATTCGTGGACCGTACATGCACGGGGATCCAGCCCACAACCACATGTGCGACCTGTGTGGAATGATCTATAGGTATAAGCCTAATATGTTCAAGCATCGCGATCTTTGCTCTACCTTGCCAGAGAATATCCGCACTTCCTATAGATGCGTCCATTGTAATATGACTTACCTCGTGTACAAGAAGTTTTATATCCACGTGCTGAATGAACACAAGAAAAAGGAAATCACTTGTTTCACGTGTAGTGCAAAATTCCCAACCCCGGACGATTATCTCACCCATCACGAGACTCACCGAGTCATCAGCGGTAAGGAGAATACGAACGAGCCAGCAAATGAAAAGCAGCAGGGCAACGACTACTCGATGATGGTGGACCCGCTGAACGATTCCCATCACCCGATGGACGTAAGCGAGAAGCCATTCAATTGCGCGCTTTGTGGCGAAGATTTCACCTCTAAGGCCGAACTCACCGAGCATCGCAACCTCCACCTCaaggtaaaaatatattcatgcgTGATATGTCGCAGTATGTTCAGTAGTTCGGGAGCTCTGGAGATACACATGAAGGAACATGGTATAGACGATGCCAATGAACAAGGCGCCAATAGCTCATGCGTCGAATACGGGCGGGGTAATCGCTCGCAAAATTCACTGAACATGTCCATGTCGGCTACGTCTGATCCAGGTGGGCATTTCAATCATTGCTATCTGTGTGGCAAGAATTTCTCGAATCTCGCGAATTTGAAACGTCATGAGAAAAATTTACACATAGGGCAGAAACGCCGTTGGAGCTGCGATGAATGTAAGCGACGCTTTAAATCACTTGAAGCTTATGAAGAACACGTAAAAACGGAACACGGACCCCAGCCGCTACCGTCAAATCCTGAGAAGAAAGTAACGCCTGCACCTCCACTGCAGTCGAATAGTGGCAAGCCACTGATGCAGTGCCCTAAATGTCCCAAGACCTTTGCCTACCAGGGCAATCTCATCCTCCACTGTCAGAACGTTCACAAGGAGAATCACTTCGAGCGCATCGTAGCTTCTGCTCGTCTACCTCATGCCGCCCCAGTGCGTAGGGCCATAATTGGTGTCCGTGGTGGTCACTCATGCGATGTCTGCGGAAAAACCTTCCGTATGGCGCAATCACTCAAGACGCATCGCGGTTGGCATTTACGTACCAACTACCGGCTCAAAAAGGACGTCAAGGATACTACCGCAAGTTTGAACGACTCGACGCTGAGTAGCCCTGGTTTCACTATGACACCGATAGTCTCGAGCTCTCCAAAGCCGGCCAAAGCGCGCAAGTCCTTCCCCAACAATCCTTCGCAGAAGCAGCTTGATGCTATTCCGACCCTACAGTGTCAAGTCTGCGATGATCGCTTCCACGACGTCGCCGATCTGCGTAAGCATCTTTGGGATGTGCACTGTGCTCGCAACAAGCCCGAGAAGACCTTTACGAGCGAACTGCAGTGCGAGCTTTGCACCAACAAATTCCAGGATGAGGATGCCTTAGAGGAGCACATGAAGTGGCACTCGCAGAATCCTATTCTCAGCGGTAACAGCAATAGTAACAGCAACAGTGACAGCATAAGCAGCGCTATAAGCGCTGTACCCGAGAGGAAGACCTTCTATTGTGACATATGCGGCAAGTACTACAGTAACCACAAAGTATTCCTGCGTCACAAGAAGCTTCACAAGGTACTGCCCGCCTCAAGCATGCTGAATCTTCAGTCGCTCCAGAGCAGGCGTCACTACTGCCATCCTTGCCAGAAGAATTTTTCCACGGAGGCATCGCTCAGACGGCACAAAGCCTCCCCCTGCCACATGAGCGCGGTGCGCTCCCAGATACACGCTCCGCCCAAGAAGATCACCACTACCGCCATCGTGCACCATCCGCCGCCGGATCACTTGAAGCTGCAGACCGTCAAGAAGGAGCCCGGCCTGGATTATGCGACGACGAGCCAGCCCAGTTTACAGGCGAAGAAGAGACCTGTCACCTGTCACATCTGCAAGATGATCTTCCCGAATATGAGCGTGTTGTACCAGCACAAGCAGCTAGTGCATAAGGTGCCAACTGGATTCAAAAACAAGGCAAGCTCTCAACAGACTGAGTGTGTGCCTCTCATGAGCGCTGAGGGTACGGTTTGTTGCAATCTCTGCGGCAAACAGTTCCCCGGCGTGTCGAATCTCAAGCAGCATTTTGCGCACAAACACAAGCTCAAAAGCTCGACCTTTCCCTGCAGTGCCCAGGGTTGCAAACTAGTTTTTAGCAGTATAAGCTCGCTTAAAGCCCACGAAACAACCCATTCGAGCCTGATTTATAACTGCAATCTCTGCGACAGGCACGTGTTCTCGAAGGCTGCGATGACGAAACACATGCTGATGATGCACAAGCCTATCTTTCAGTCTGGGGCTGATAAGACCACCCTTTGGTCCGAGACGGATCTGACGACTTACAATGTGAGGAATTGCCAGAGCACGGCTTGTCCGAAATGCAAGATCAAGTATCCTAATCTGAGGGCGCTTAAGATCCATTACTTGAAGTTCCATGAGAGTACATAA
Protein Sequence
DKLPTLVCTTCIQNINHWHLYKDVVSKSQEKLQQWLSKQNTIQPMVTVKEEPVDVEFRDENAQTAANESNMTNHVASGPENVEIENESTTPAVTEIAKAATVETTKKSPEQSSKFNERIDKEYPLEVQIKTEPVDTEDEDDCNIDVESVNSGELLINPMAVAVASNANNDRHMSRYHGINNLPSNNGAKLQGQFTSGKQKSKLLQHPDNLDPNADTQSKSNPDEVEFEQMIKTDPLTPVQRNIIGQLKTFSCYSCQSVFFDRRHTLNHIRQHMPDLRIYTCIACLTEFADRSMYKLHCGASFECAMKIALVIPKVGNEKYFTCNMCLRSFNNRRELLSHLASHIGKEDRQMTQPSRAPVKLKSILPSPASKNDLTPSKRSPSGIRGPYMHGDPAHNHMCDLCGMIYRYKPNMFKHRDLCSTLPENIRTSYRCVHCNMTYLVYKKFYIHVLNEHKKKEITCFTCSAKFPTPDDYLTHHETHRVISGKENTNEPANEKQQGNDYSMMVDPLNDSHHPMDVSEKPFNCALCGEDFTSKAELTEHRNLHLKVKIYSCVICRSMFSSSGALEIHMKEHGIDDANEQGANSSCVEYGRGNRSQNSLNMSMSATSDPGGHFNHCYLCGKNFSNLANLKRHEKNLHIGQKRRWSCDECKRRFKSLEAYEEHVKTEHGPQPLPSNPEKKVTPAPPLQSNSGKPLMQCPKCPKTFAYQGNLILHCQNVHKENHFERIVASARLPHAAPVRRAIIGVRGGHSCDVCGKTFRMAQSLKTHRGWHLRTNYRLKKDVKDTTASLNDSTLSSPGFTMTPIVSSSPKPAKARKSFPNNPSQKQLDAIPTLQCQVCDDRFHDVADLRKHLWDVHCARNKPEKTFTSELQCELCTNKFQDEDALEEHMKWHSQNPILSGNSNSNSNSDSISSAISAVPERKTFYCDICGKYYSNHKVFLRHKKLHKVLPASSMLNLQSLQSRRHYCHPCQKNFSTEASLRRHKASPCHMSAVRSQIHAPPKKITTTAIVHHPPPDHLKLQTVKKEPGLDYATTSQPSLQAKKRPVTCHICKMIFPNMSVLYQHKQLVHKVPTGFKNKASSQQTECVPLMSAEGTVCCNLCGKQFPGVSNLKQHFAHKHKLKSSTFPCSAQGCKLVFSSISSLKAHETTHSSLIYNCNLCDRHVFSKAAMTKHMLMMHKPIFQSGADKTTLWSETDLTTYNVRNCQSTACPKCKIKYPNLRALKIHYLKFHEST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00690531;
90% Identity
iTF_00690531;
80% Identity
-