Basic Information

Gene Symbol
-
Assembly
GCA_030522685.1
Location
JAPYZA010001030.1:5411-16360[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 9.2e-06 0.0019 20.2 1.0 1 23 209 231 209 231 0.98
2 32 0.004 0.83 11.9 1.9 1 23 254 277 254 277 0.96
3 32 0.0002 0.041 16.0 0.5 2 23 284 306 283 306 0.96
4 32 0.00047 0.097 14.9 0.6 1 21 326 346 326 347 0.95
5 32 0.0017 0.36 13.1 0.1 2 23 456 477 455 477 0.97
6 32 0.052 11 8.4 0.2 1 23 483 506 483 506 0.89
7 32 6.8 1.4e+03 1.8 0.1 5 20 518 533 517 535 0.89
8 32 0.00017 0.036 16.2 0.1 1 23 575 598 575 598 0.96
9 32 0.11 22 7.4 0.4 1 23 604 627 604 627 0.96
10 32 0.18 37 6.8 1.5 1 23 640 662 640 662 0.97
11 32 6.2e-05 0.013 17.6 0.3 3 23 706 727 705 727 0.96
12 32 0.054 11 8.4 0.9 2 23 790 813 789 813 0.93
13 32 4.6 9.6e+02 2.3 0.0 2 23 822 844 822 844 0.84
14 32 0.29 61 6.1 0.1 2 23 851 873 850 873 0.93
15 32 1.9e-05 0.004 19.2 1.2 1 23 881 903 881 903 0.98
16 32 0.057 12 8.3 0.4 2 23 954 977 953 977 0.95
17 32 0.00031 0.064 15.4 3.3 1 23 980 1003 980 1003 0.97
18 32 0.013 2.8 10.3 0.4 2 23 1010 1032 1009 1032 0.95
19 32 0.001 0.22 13.8 4.8 1 21 1074 1094 1074 1095 0.94
20 32 0.004 0.83 12.0 1.8 2 23 1109 1130 1108 1131 0.93
21 32 1.9 3.9e+02 3.5 3.3 1 23 1134 1156 1134 1157 0.95
22 32 0.012 2.4 10.5 0.9 2 23 1164 1187 1163 1187 0.93
23 32 1.4 3e+02 3.9 0.2 2 23 1195 1217 1195 1217 0.95
24 32 4.2 8.9e+02 2.4 0.0 2 23 1224 1246 1223 1246 0.88
25 32 0.33 69 5.9 2.7 2 23 1255 1277 1255 1277 0.96
26 32 0.39 81 5.7 0.8 2 23 1283 1305 1283 1305 0.93
27 32 0.026 5.5 9.4 0.1 1 23 1372 1395 1372 1395 0.96
28 32 0.045 9.3 8.6 2.0 1 20 1423 1442 1423 1444 0.91
29 32 0.47 98 5.4 1.9 2 23 1542 1564 1541 1564 0.94
30 32 0.098 20 7.6 0.7 2 23 1571 1593 1570 1593 0.95
31 32 0.44 93 5.5 1.8 1 23 1604 1626 1604 1626 0.97
32 32 0.052 11 8.4 0.9 1 21 1633 1653 1633 1654 0.92

Sequence Information

Coding Sequence
ATGGAAGGGACGCGAAGTATTTTTTTTCGAGGAGTGGGTTTGGGTGCGGGGAGATGGATAGCTGAGAATGACCGGCTACCAAAATGCCTTTGCTACAGATGCATGTACAATTTGGAGAATTTCTACGATTTCAGAACGGCCTGCGTCAATGCGGTCGCTTTGCTCGAGAGGTGCTTGCCACCGGAAGAGCCACAGACGGAGATAAAGAAGGAAGCGGAGGAAGTCGAGCCGTACTCGGAGCTGCGAATGGAGCTACTGAAAGAAAAAGAGTGCGTCGGCGGTTCTGGCGTCAACGGCGCTGCAATAAAGAAGGAAAGAGCGAACGCGGAAAACGGCTTGCCAATGCTGATCCCCGAGGCGCCTGTGGTAAATCCAAACGCGGCTCTTGGTACTCCGCCGAGGCTAAGGTCGGACGGTGAGCCCGAACTCGACGAAATTGGACCCGATCATCCCGCCGTCAATGACTGTCTGGAAGATGATCACAAATCGGACGAGTACGAGATGGACATGGAGACAAATCCAAGTGATTTTCTGGAGATGAGCGCGATGGTGCCCGAGGAGGAGCAGGTAATAGCCCCGGCCGACACCGGCGTCTTCCAGCATCGCAACGAGCAGCACGAGGTTTACGTCTGCTCGCTTTGCAACAAGGCCTTCAGCTCGAAGGGCCACCTCTCGCTCCACGCCAGGATACACGTAGGCGCCGGCGACGTGATTGGAGAGAAGGTCATCACCGATGATCACACCTCCTACAAGAGGCCTTACCAGTGCGATCTCTGCAACAAGTCCTACTCGACGGCCAAGCATCGCTGGGGTCATGTATCGACGACGCATCGAGGTCATCCAGCGGTGACATGCGGCTACTGCTCGCGCATCTATTCAACACGCACGAATCTCGAGGAACACATAAAGTCGCGGCACGCCGGACTACCTCCACCGCCTGAGATGCAGGTACCATACGTGCAACCTGACTCACGTTACCAGTGCAAGACCTGCCCCAAAATGTATACAAACATTACGGATCTGAACAAGCACAGTAGGCTATGCCTCGGCGAACAGCATCGCAGAGACAGCGGCTTCAACTCCCAGAACTTCGGTAAGAAAATGCAGATGTcAAAACTTAAAAATGCCTTGAATCCAGATCATGCTTCGGATATATCGAGTATTGATTCAgattatgaaaataaagattaCAGGAGCGCGGAAGCGAAACTTGCCAAAAATCCACAGTTGACTATTCTTAAGCAAGCTCTGATCAAGGGTGACTGCGCGAAAAAGGAATACGAAGAAAGGCAGAAAATGTTAAgcaaacagaaaaaattaacCAATACAACTAAGGAAACGCCAGACCCAGAAGCAAAGAGATGGTACTGCGAAGTTTGTCCACTCAATTTTCCGACTGTAGATGACTTGAGACAGCATGAGAAGACCCACGATGCCGACAAGCCTTACATATGCATTCTTTGCGAGAAGGACTTCGTCTTAAAGTCGTCCTTGAGCAGGCACATTCTCGCATCTCATGGTGTGGATCCGACGCCATTGATCGAGAGTGACAAATGTTTAAAGAAGTCGGTGCAAGAGTCGAATTTGCGTCAGCACGCAATCAAGGAGGAGAACATTACCAAAGAAAATTCCTCGTCTCCTTCGTTTTCTCATGACAATATGGATAACGATGAAGATGAGCATGAGAACGGAAACGACAATATGCTCGAAATTGAGACAGTTTTCGTTTGCGAAATCTGTACGCGTGATTTTAATGATAGAGCGTCGCTTTGGTTACACATTCGAGCTACTCACAAAGAATACGCAGCATTTGCCTGCGGAGTTTGTTTGAAAATCTGTCAAGATAATGCGCAATTACTAAACCATGTCAATATGTACCACGGAGGCAATAAACTGTTAATGTCTGAACAGCGAAgGTATAGCTGTACGATATGCGGTAGACAGCACGATTCACGGAAGAAGCTGATAACACACGTGTCAATTCATAATATAGATTCGGGTTATGATCCCGCAGGATTTGTTCAACTTAATACCAATTACTACAACGAAAACGTAAATAGTAACGAAGGCAATGAACTAATCATGGACTGTGAAGAAGAAACTGAAAAGGTCGATTGCTTCATTTGTTACAAGTCGTTCCCTAACGAGGACCAGCTTATACGTCACCAGCGAAACGCTCACAAAAGCGAGCAAATGGTGCAAATGGGCGAACATGGCGCAAACGGCGGTCCCAATGGTCAGAACGGTACAGGGAACCGAGCTCAGTATCACTTATTTTTTGTGTGCGAACTCTGTGGCAGCTCGCACCCCAGCAAGTGGGAACGCTGGCTACATGTTAGCAGCGTGCACGGAAATGAGTCCGCTATCAGAtGTGAACGCGATGACTGCGGGAAAATATTCGCCACGAAAACGCTACGCAACGAGCACGCGCAGCATCACCAGCTTCAGGGCAGCTCTCCGAACACCTGTGAGATTTGCGGCAAGCTGTGGGGCAGTCGCGTCGACTACTGGAAGCACGTGATGGGCGTTCATGCCGATACGGTGCCCCTCATCTGCGGAGTTTGTCTCAAGGTGTTCCCCGACGTACTGCAACTTAGTCAACACGTCAAACTGAAGCATTGGCCACTTACCAATGGCGACTTTAGCTGCGACATTTGCGGCAGGCCGTATTCGAACAAGAGCAAAATGTCGAGGCACAGAAAGATTCATGGCCTGGATGGCGAGGCTTATAATCCTTCGGCGAATAACAGCAACTTAGGTATTAACGACTCTTCCATCAACGATACATTTAgtCTGCCGATGCCCCTGCAGTTAGACAATGGACTAGCGCATCCGATCGAGCAGGCTTCGGTCGATCTGTCCTGCGAGATGTGTGGCGACCTCAAATTTCCCACTCTCGAAGATCTATGCAACCATCGACGCATAGCGCACAGTCTCTTCCCATGCGACCTCTGCAATAAGTGTTACGGTCGCACCTCGCACCTCTGGAAACACGTAAACCGCGTGCACAAAGGTCATGAAGACGTGACCTGTCGCTACTGCCTCAAGACGAGTGCCTCAAGAGAGCACCTCGCCGCCCATATCGCGAAAATTCATCGCTACGAGCCTGAGGTGAAGAGTGATTTCAGAGATGCAATTAGCTACAAAACTAGCAGCTACAATGCCGCGGCTGCTGCAGCGGCATCTTCTATAAAAGTTGAAGATGATGACAACGTGCTCCACTTCTGCGAAAAGTGCAACAAATCCTTCCACAAGCGGTATTTGCTACGTCGTCATATGAAGGGCTGCCAGAACTATCGTAAGGATCCGGGCTCCCTGCTGACGCGCTGTCGCGCTTGCGAGCGTATTTTCAAGGACAGGGCAAGCTTGCAGAAGCATATTGAGAACCACCACAGCTCGTTCGAGTGTCATCTCTGCAAAGAGACCATAACCTCCAAGCTTGGTATCATGACGCACAACCGCATGCACCACATGCACCATCCAGATCTCACTTGCGAGCTCGAGAACTGTCGCAAGCTCTTCAGAACAAAAGAGGACCTCGAATCGCATCGTAAAGATCACAAACTCCCCGATGCGCCAAATGTCTGCGACTTTTGCGGGGACACAGTGGAGAACAAGCTTAAGTTGAAGATGCACATTCTCAGCTTACACAGAAACGAAATCGGAGTTTCTTGCGGAGTCTGCTTGATCCCTATGAAGGATCCTAAGGATCTCAAGAAACACGTGGAGGAGGTACATGAGAGCATTCTGCTAAGGCCCAACACCTGCCAGgtCTGCGGTAAACAATACGCTTCCAAGTGGAAGGCGTTCGACCACACGAAGAAGTGTCACGGCAAGGTGTTCCGCACGTGCAAACAGTGCCTGGCGGTCTTCACGTCCGACGAGGATCTACGCTATCATTACGAACACATTCACAACATTCCCAAGGACCAGCTCGACGCGTTCCAATACAAGCTCGAAGTGTCGGGCATCAAGATGGAAGACTATGATCTGGGATCACTCGAGGTCGTCGTGAAAGAGGAGCCTGAGGAGCTCGACTTCGACATGGAGCCGCTCGATGAGGACAACGGCAACTCGAACGACTCAAAACGCCGAAGATCCATGACTGACACCTACGATTGCGAGATCTGTCCGGAGATATTCCTAAACAACGAGCTGCTTTCCTCGCACTACAGGAACGTGCACAACACAGACCCGGAGCGCATGTACAAAAAGATGAAACTGGAATCTAGTAAATCAAAGAAGAAGATGCGAGAAAGAGAAAACTATGAATGCAAGAATTGTCAAAAGCAGTTCTGTACTAAGACCCTATACCTTGGCCATGTGAGCGTTTGCACAAGGAAGAGCTCGGGAATGCCCCCGGCGTCTATTTTGGAAGCGCACCTGAAGAACAATAATCAGATAAAGCGCGAGGAGCCCGAACCTATCCTCTGCGAGACGAACCTCAACATTCCAGATTTTAACCTCTTTGAGGACATCAACATGCAGCTGTCAGGCCAGAAACCGGTGCCGAGCTTGATGCCCCTCGGTTCTGGCGGAGGTGGCGGTCATTTATCCAAGTCTTCCAAGTATTCTCGTAAGGACTCACGCAAGGTCTACGACGAGTCGACTAACACCGAGTGTACCTGCGAGGTATGCGGCAAGCAGTGGCCCGCCAAAAAGCATCTGTGGCAGCACCTGATCCGCTTCCATCGAGCTGAGGCCGCCGTTACTTGCGGCGTCTGTCTCAAGCTCTGCTCCACTTATGATGACCTGACTGAGCATCTGAAAAATATACACCCGTCCATTCTTTCGACGACTGGCAACAACTTCACCTGTAAGGTCTGCGGTCGCTACCACAATGCGCGTAGTAAACTGCTGCTACACATGAGTATCCATATTAACTGCACGAGTAACCACATGTGCACGAGCTGTAACAGGAGCTTCGAGAGCGACGAGAAACTACGGGAGCACCTTACCACCTGCATGGGAGCTCGCAACGAGCAAACCGGTGAGGAAGGCCAGCAGGTAACCGTGAAAGAGGAGGGTGAGGAGAAGGGCAGCCTCATCGGCGATGAGGAAGACGCTGGGGAGAACGAATTTGAATCCGAAGACGAAGATAATTCCGAGAACAGCAGCTCCAACAAGTCCAACGACTCCGACAAGTCCAACGACTCcgacagcaacagcagcaacagtgACAGCAATAGTACCAGCGAGGacgatagcgacgacgacgaggacggcAGGTCAAGAAATATTGAGGAGGATAGCAGCAACAGCAAGCAATCTATCACCGTCGAGGAAATGCATCCCAGCATCAAGCGTGAAGTGATGGAGGAGAACGAAACGATGAGCATGGCAGGGGATGACGATGAAgaagatgatgatgatgaaaaGCCGGGATATGAGGGAATGTCCGAGTCAGAAGATGAATACCAGAAAAAGAGTTTGGTGGAACAGCAACAGCACGAGCTCGAGGAACAGTACGAGATGGCGCAGAAGGAGCCGATGCTTGTCAATTATTCAGACGATGAAGGACCTCCGGCTCTGAGCCCTATGATGCCGATGGCCATCAAACAGGAAGGGAGCGAGCAGAATGACGACAGCCAGGAGGAGCTCGGTCGGCAGCGCACTCTCAGCGACTCGTTAAGTGCCAAGAAGAAGAGCGACAGTGAAGAGAGCAGTGAGGAGGAAGAGGCCGAAGGGTCCGAGGAGGAGCATGCTGAGATCGTTGATCCTAACAGCGCCTTCCATACTGACAATAATTCGGGGAGCAGTAACGAAGgTGAAGAGCAAGAGCAAGAAGTAGTCGAAGAGCAAGAAGTAGAGGAAGAACAGGAACACGAgcaggaagaagaagaagaacaagagCAAGAAatagaagaaggagaagaacAAGAAATTCAAGAAGtagaggaggaggaagaagacgaTGAGAACATGGAGCACGCTTTGAATGAGGAGGAAGTACTAGAAGTCGATGAAAACGGTATGCACAATCTGAACGGCACGGTGTTAATGCTAGCCAACGATGAGGACGGTAACCAGATTCTTATTGAACGCAACATGGCAGATCTTGAGAACGATGACTCCGTCCATGATATGGCGCAGTACGTTTTTCAGGACGGCACGGGCTTCGCCCTCGAGGATTACGAAGCGATCGTCGAGAGCCAGGGTGACGAAGAAGAGGAAGATCACCACGGCTTTGCCATGGAAATTGGACACTCCCAAGAGGAGGAAGTCGAAGAACAAGAACAAGAACAGGAGCATGAGCACGAGGAGGAAGTAGGGGAggtggaggaggaggaagaggaagaagagATGGAAGAAGAGGAAGAGCATGAACAAGATCAAGAACATGAACAAGAACATCAAGTGGCAGAAGAGTGTGAAGTTGAGGAGGAGGAAGTCACATTAGAGCAATTGCACGAACAGGTGGAGGACGAAGAGGAGCTAAGTTCCAGTGCCAAAAGTTAA
Protein Sequence
MEGTRSIFFRGVGLGAGRWIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPEEPQTEIKKEAEEVEPYSELRMELLKEKECVGGSGVNGAAIKKERANAENGLPMLIPEAPVVNPNAALGTPPRLRSDGEPELDEIGPDHPAVNDCLEDDHKSDEYEMDMETNPSDFLEMSAMVPEEEQVIAPADTGVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEMQVPYVQPDSRYQCKTCPKMYTNITDLNKHSRLCLGEQHRRDSGFNSQNFGKKMQMSKLKNALNPDHASDISSIDSDYENKDYRSAEAKLAKNPQLTILKQALIKGDCAKKEYEERQKMLSKQKKLTNTTKETPDPEAKRWYCEVCPLNFPTVDDLRQHEKTHDADKPYICILCEKDFVLKSSLSRHILASHGVDPTPLIESDKCLKKSVQESNLRQHAIKEENITKENSSSPSFSHDNMDNDEDEHENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICQDNAQLLNHVNMYHGGNKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNIDSGYDPAGFVQLNTNYYNENVNSNEGNELIMDCEEETEKVDCFICYKSFPNEDQLIRHQRNAHKSEQMVQMGEHGANGGPNGQNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSVHGNESAIRCERDDCGKIFATKTLRNEHAQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVLQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEAYNPSANNSNLGINDSSINDTFSLPMPLQLDNGLAHPIEQASVDLSCEMCGDLKFPTLEDLCNHRRIAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASREHLAAHIAKIHRYEPEVKSDFRDAISYKTSSYNAAAAAAASSIKVEDDDNVLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGSLLTRCRACERIFKDRASLQKHIENHHSSFECHLCKETITSKLGIMTHNRMHHMHHPDLTCELENCRKLFRTKEDLESHRKDHKLPDAPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEEVHESILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYKLEVSGIKMEDYDLGSLEVVVKEEPEELDFDMEPLDEDNGNSNDSKRRRSMTDTYDCEICPEIFLNNELLSSHYRNVHNTDPERMYKKMKLESSKSKKKMRERENYECKNCQKQFCTKTLYLGHVSVCTRKSSGMPPASILEAHLKNNNQIKREEPEPILCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGSGGGGGHLSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCSTYDDLTEHLKNIHPSILSTTGNNFTCKVCGRYHNARSKLLLHMSIHINCTSNHMCTSCNRSFESDEKLREHLTTCMGARNEQTGEEGQQVTVKEEGEEKGSLIGDEEDAGENEFESEDEDNSENSSSNKSNDSDKSNDSDSNSSNSDSNSTSEDDSDDDEDGRSRNIEEDSSNSKQSITVEEMHPSIKREVMEENETMSMAGDDDEEDDDDEKPGYEGMSESEDEYQKKSLVEQQQHELEEQYEMAQKEPMLVNYSDDEGPPALSPMMPMAIKQEGSEQNDDSQEELGRQRTLSDSLSAKKKSDSEESSEEEEAEGSEEEHAEIVDPNSAFHTDNNSGSSNEGEEQEQEVVEEQEVEEEQEHEQEEEEEQEQEIEEGEEQEIQEVEEEEEDDENMEHALNEEEVLEVDENGMHNLNGTVLMLANDEDGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVESQGDEEEEDHHGFAMEIGHSQEEEVEEQEQEQEHEHEEEVGEVEEEEEEEEMEEEEEHEQDQEHEQEHQVAEECEVEEEEVTLEQLHEQVEDEEELSSSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00690510;
90% Identity
iTF_00690510; iTF_00693222;
80% Identity
iTF_00690510;