Basic Information

Gene Symbol
TRERF1
Assembly
GCA_030522685.1
Location
JAPYZA010005937.1:16567-22186[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.3e-09 9.4e-06 27.4 0.1 2 46 633 677 632 677 0.96

Sequence Information

Coding Sequence
ATGATAAATCACTTAATAAATGACATTAAAAATCTCgtgaaaataataagaatattccaaaaaataattacatatcaATTATTCACCAACACtttattaacaaaacaaaacGTCAACCTAAGTCAGACGTCGAGCCTGCTCCAAGACCAGGCGGGCAACGAGGCCCTCCAGGACATCAACCTCGAGGAGCGCTTCTCCTCCCAGCACACCGTCAACCCCGACCTCCAGGCCCTCGTCAACTCGCCCCTGCCAGACTCGCTCGCCGAGTTCAGCACCTACGGAGCCAACTACAACGACGGCTCGCACACTCTGCCCAGCCAGTCACCTCTCCCCTCGCCGCTCACCCGACACGACAGCCCGAGCTTCACCTACCCAACACCACCAGCCAGTCAAGAAGGCCTGCTCAGCGGCAGCCTGCCCCTGCTCAGCCCCCAGGAGGACAGCGACGCCGTGCACTCCGTCTCCTCGCCCCTCTCAGCCGCCTTCTACAGCACCAGCATGTCCTCGGCCGCGGCGATCGAGGAGGCCCTCAGCGAGGTCCTGCCCGACGAGGCCGACGCCGACGGCGCCGATCTCTACGGCTCCGGCTGCCCCAACCCCCACTCGCCCCTGCCGAGCCCGCTCTCGGCCACGCCGGCGCCCTCGCCGCTCTCCTCGCTGCCGCCCTCCTCGGTCTCCTCGCCCGGGCCCGGCAGCTTCACCACCTCCAGCTTCCCCATGTCGCCCCACCACACGCTCCAGAACCAGATGATGCCCAACTCCGAGGACCCGCTGCTCTCCTCCAGCCCCAAGGACTTCGGGGCCGGCAGGCGCAAGTTCGAGTTCCAGTCGTACAAGCTCATCACCAATCAGAATCTCGTGGACTTTGGCCTGGGCAACGGCAGCGTCGCCGGCATCGTCGTCGACAACAACGGCGAGTTCAAGCTCATCCAGACGGCCGGACTGCAGAAGGCGAACGTCTACGTGCAGGCGGGAGCTCTGAGTCCAGCGCTGGCTTTCAGGAAGGAGATATGCCTGACCGGGCCGAAGCTGGAGCAGGGCAACGTCAACGTCAACGTCAACTTGGTCAACGGCCAGGGGATGAATCTGCCGAACCACGTTTACCAGCAGGCGCAGGTCCATCAGGCCATAAACCCGGCGAAGTTCCTCATCCAGACGAACCAAGCCGGCAAGCCCAACCTCAAGCACAAGGCGACCAACGGCCTGCCCGTGCCCGTCGACCAGATCAAGGAGGAGGAGTCTCTGGACGAGGACGTCTTCCTCAGTCCCAGCAGCGTGCCGATGGCCTCCTCAGGCAGTCCAGCGCGCTGCCACAAGAAGCGGCCGCGCCTCGACGGGCCGGCCCTTGGACAGCACAACGGCGGCGGTTCCTCGGGCATAAACGGCTCGCACTCGTACCCGTCGAGGCTGCGCCGAGCTTGCGATCGGCACTGGGACAGCAGCTACACGCCGCCGCCGATACTCGACCCGTCGAGGCCGGGGCCCGGACTCTACGCCAGGCTGCACCAGAACGAGCGGGATTCCGCGGAATTTAGCTCTGATGACTCGCAGGGTAATGACGGACCGCCGCCGAGGATTAATATTGGCACGAGGTACCAGGCGACGATACCGCAGTTCGTTGAGGCGGAGGTGGACAGGCTGGCAGCGGACCCGGAGACGGATCATTTGCTTTGGGACCCTGGCATCGATAGTGCCCTCACCGAAACTGAACTGGAGATGTATCTGCAATTTGCCTGCTGTGCTGCTGTCCCTGGCGGTGGAAGAAACAAAGAGTATGCCCTTCACCTTTTACACATGTGCAGGGGCAATATTCGCGAGGCAATGCTAAAACTGATGCGGCCAACTTCGGCCCTAGCGTCGGAGCATCCGTACCTACGCTACGAGTGCCACGAGTCAGAGCGCTGGACGTCCCACGAGATGGACGCGTTCTACCAGGGCCTGCTCAAGTACAACAAGGACTTTTCGGCGATAGCGCGCGACATCGGCAGCAAAAACAGCCGGCAGTGCGTGCAGTTCTACTATCTCTGGAAGCGGCTCTGTCCCGACGAGTACAAGAGGCTGCGGCTGCGCTACGGCAAGCCGAAGGTCAAGCCCGAGCTTAACGGCTACGGCAGCAGGGACAGCAAGGACACGAGGGAGCTGCAGGAGGCGATCGCATCGGTCACGGAGCTGGACTTCAGCGAAGGAAAGTCCATTCTCCATCGGACTCTGATGCAGACGACGAATGAAAGAGAGAACTCTGCCACTCTGACAACGAGCGACGGTGAATTGCGACTTTTCGCTTATGATTGTCAAGATAGCTTTAGCGGGAGCGTAACAGTAACGATGCCGGCCGGGAGCTGTGCCCGAATAGGCCGCGCACAGGCGGCCCCCAGCTGCCACGCCGGCAATCCTGCCGGTggggctgctgctgccgccgccagCGGCTTAGCCACAGTCGACCACACCAACTCACAAACTCACACTAGTACCGAGCAACAACTACCCGCGCCCACCCCACTTCACTACCCCTGCAAGATTTGCGGGAAAGTGTTCAACAAAGTGAAAAGCAGAAGTGCACACATGAAGTCTCATCGGCCAATGCCCACGCCCGATTCAACGGCACAGGAATCTAGAAAACAACAGCAACAAGCGCAACAGCAGCTGCAAAACAGCATTCAACACGCTCAAGCGAATCAGcatcagcaacagcagcagctgAGCAGCGTGCAAATGCAAATTCAGCAGCACCCCCAGCAGCTGATTCACCCGCAGGAttaccagcagcagcagcagcagcagctgcagcaTCAACATCAGCAGCAacttcagcagcagcagcagcagcagcaacaatgTCAAATAACTCCGACGAATTGCGACGTTCAAACGAGCCACGTTTGGCACAATCCGCCGAGGCTTCGACCGCCATAG
Protein Sequence
MINHLINDIKNLVKIIRIFQKIITYQLFTNTLLTKQNVNLSQTSSLLQDQAGNEALQDINLEERFSSQHTVNPDLQALVNSPLPDSLAEFSTYGANYNDGSHTLPSQSPLPSPLTRHDSPSFTYPTPPASQEGLLSGSLPLLSPQEDSDAVHSVSSPLSAAFYSTSMSSAAAIEEALSEVLPDEADADGADLYGSGCPNPHSPLPSPLSATPAPSPLSSLPPSSVSSPGPGSFTTSSFPMSPHHTLQNQMMPNSEDPLLSSSPKDFGAGRRKFEFQSYKLITNQNLVDFGLGNGSVAGIVVDNNGEFKLIQTAGLQKANVYVQAGALSPALAFRKEICLTGPKLEQGNVNVNVNLVNGQGMNLPNHVYQQAQVHQAINPAKFLIQTNQAGKPNLKHKATNGLPVPVDQIKEEESLDEDVFLSPSSVPMASSGSPARCHKKRPRLDGPALGQHNGGGSSGINGSHSYPSRLRRACDRHWDSSYTPPPILDPSRPGPGLYARLHQNERDSAEFSSDDSQGNDGPPPRINIGTRYQATIPQFVEAEVDRLAADPETDHLLWDPGIDSALTETELEMYLQFACCAAVPGGGRNKEYALHLLHMCRGNIREAMLKLMRPTSALASEHPYLRYECHESERWTSHEMDAFYQGLLKYNKDFSAIARDIGSKNSRQCVQFYYLWKRLCPDEYKRLRLRYGKPKVKPELNGYGSRDSKDTRELQEAIASVTELDFSEGKSILHRTLMQTTNERENSATLTTSDGELRLFAYDCQDSFSGSVTVTMPAGSCARIGRAQAAPSCHAGNPAGGAAAAAASGLATVDHTNSQTHTSTEQQLPAPTPLHYPCKICGKVFNKVKSRSAHMKSHRPMPTPDSTAQESRKQQQQAQQQLQNSIQHAQANQHQQQQQLSSVQMQIQQHPQQLIHPQDYQQQQQQQLQHQHQQQLQQQQQQQQQCQITPTNCDVQTSHVWHNPPRLRPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00691885;
80% Identity
-