Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_900480025.1
Location
UDEW01001631.1:11985-15299[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.044 53 4.4 0.0 22 43 235 258 222 261 0.79
2 6 5.3e-10 6.3e-07 29.8 0.4 1 44 267 312 267 314 0.96
3 6 9.6e-08 0.00012 22.6 0.0 2 43 322 367 321 370 0.96
4 6 1.1e-12 1.3e-09 38.4 0.0 1 45 376 421 376 422 0.95
5 6 1.5e-10 1.8e-07 31.5 0.3 4 46 432 474 429 474 0.95
6 6 2.1 2.5e+03 -0.9 0.0 6 26 552 575 552 580 0.76

Sequence Information

Coding Sequence
ATGAGTGAAGAAGAGGACAATCAGTCTTTAATAGATGAAATTCAGGCCTTAGAAAATGTATTAGATCAGAAACGAACTTTagatattaatgattattccAAGTCCAGtaaaacatcaaataaaaatgtattgggAAATGTGGAAACAAATCTCAAAGAGGAACAAAATGGAATTAATGAACCTATGGATGTGGATGAAGAAATTGTTAGTGATAATGATGAATATGCAAATTATAGTTGTGATAGTTTACAAGATTTATTTgaactcaataaaaaattaataggaTTATTAGAACAATCTAGAGAAAAAGTGGAATCTCTTTTAGAAGAATGTACAAAAAAGGAGCGGtacattgaaaaacaaatttctaaaactgCATCTTCTTGGCAGAGTAAAATAGTAAGCTTTAATGCCGGCATGCCTTATTTcaaggataaaaattattattcagccaaaagaaatgaagatacagaagctaaaattaaaaatggtgAGTTACGATTGGCTGAACTTCAACGTATTCATCGTTGGAGTCAAatagataaaagtaatttgttaaaagcTATAAGGTATGAAGTCACATTAACTCTATTAAGAAAAGATGGACCtgatgaaatatatattgataattcCATCACTAAAACAAGTCAGCTACCAGTTGATGTCAAAAGAGCAATTGGATCACTAGGTTCTATGAAATTTGACTGGTTAAAAATAGCTAATGATATTCCTGATAATAAACACACTGCAGAAGAATGTGAAGTTATGTGGAATGTTTTTTTGCATCctgatattaataaacaaagatGGACTTCAagagaagataaaaatttaaatcgtaTAGTAGGAGAATATGAATTTGAAGACTGGGATGGTATTGCCAAAGAATTAAAGACAAATCGTAGTGGTTATCAGTGTTTTGTTAggtataatacaaataattggaaaaatttaatgaaaggtCAATCATGGTCACCAGTAGATGACAAAATGCTTACTGATCTTGTACAAAAGCTCAAAATTGGAGATTATATTCCATGGGGATATATTGCAAGTTGCATGGGTAATTGGACAAAACAACAGATATATTTTCGATGGACCTACAGTTTAGCTCATCATTTAAAGAAGGGAAGATTTTCAACAAAAGAAGATGAAACACTTCTATCTGCTGTGGAAAAATATGGACCAAACTTCAGCAAAATCTCTGCTTTAGAAATGACTAACAGGACAAATATACAACTAAAAGAACACTATCAGACACTGCAGGCAAGATGTAacgcagttaaaaaaatttggaatttacAAGAAGATGCCAGACTTATTGAACTCCAACAAAAGTATGGTTGTAATTgggcaaaaattataaaagaactgCCTGGTACTACAAGGATACAAGCTAGGCATCGTTATGCTACTCTTTTGCGTTTTCATCGAAAAGGTATTggtatagaaaatattgatagGACGGAAGTAGATCCATTGTTAGATCATACTACAGTGACTTACACCAGTAATTCTCCTTGGTCTGGtgagaataaagaaatatatgtcAAACATTTAAAGATTGATgataatcttataaattttttcaaaaaagacaatatgttaaaaaaaattcaaaaaatcaaaaaatcatacGATGTAGATGAACTGCAAGAAGATACTAAGAaagtttatgatattttacaaaagcttggtgcaaatttaaatatacctaATGTTATATGTGATGACTATGAAGtcagtgaaaaaaatttacaattactcATATCATTACAAAGTTATATGgaacaacaaaaaacaaattttaatgaagatatTGAATATATCAGGTGCAGAATGTTTGGCCCTCAAGAACCGCTCACGATAAAAGAACGTTTTATACCTCCTCTACCATTTGGTTTTTGTACACcgaaagtttctaaaaaacataatactgatactattgattataatattgacactaatgaatttcatcaaataaaattacgtaagACTTTAAAATCTGATAAGTATGTGTCAGAATACATTGGAGAAGATGTGGAgtgtgaatttgaaaaattacagaaagtCATGTCAAAAAAGGATTCAGCAAGaccaaacaaaatatattcattaaagtGTAAGCCATTTGCTAACTCAGTTTTATTCTGCGAAGATGATGAAGAAATTTATGACGAAGCAagtactttaaCAACAACTACAgattttagtgaaaataaatactataactgggaatcaaataaaatgaatactaGCAGTTctccaaaagaaaaagtaatattagaAGGTGTTCCTATACAGTTAATAGAACCATCTAGAACAACGCTCCAAGCATATCAAGAACTTTTACTGATTACCGCAAGTTTTCCTTCTACTTCTTGtggacaaaaacaaaattataaactaactCTTAGAGGACGAGATGCTTTAAGTTTGTTGAAAAGACGTTATGAACAGTTATTTCATATGCCTACTGCTTTATGTAGAATAATACCACCTGATATAGTGGACGAAAGTGCATTTTTACCTGcactagaaaaattaaagaagaaaaaacttaaacttaaaagtaaaaaaaagaaacatttaagTACTGTGAAAGAATGTGTAAATACTTCGTAA
Protein Sequence
MSEEEDNQSLIDEIQALENVLDQKRTLDINDYSKSSKTSNKNVLGNVETNLKEEQNGINEPMDVDEEIVSDNDEYANYSCDSLQDLFELNKKLIGLLEQSREKVESLLEECTKKERYIEKQISKTASSWQSKIVSFNAGMPYFKDKNYYSAKRNEDTEAKIKNGELRLAELQRIHRWSQIDKSNLLKAIRYEVTLTLLRKDGPDEIYIDNSITKTSQLPVDVKRAIGSLGSMKFDWLKIANDIPDNKHTAEECEVMWNVFLHPDINKQRWTSREDKNLNRIVGEYEFEDWDGIAKELKTNRSGYQCFVRYNTNNWKNLMKGQSWSPVDDKMLTDLVQKLKIGDYIPWGYIASCMGNWTKQQIYFRWTYSLAHHLKKGRFSTKEDETLLSAVEKYGPNFSKISALEMTNRTNIQLKEHYQTLQARCNAVKKIWNLQEDARLIELQQKYGCNWAKIIKELPGTTRIQARHRYATLLRFHRKGIGIENIDRTEVDPLLDHTTVTYTSNSPWSGENKEIYVKHLKIDDNLINFFKKDNMLKKIQKIKKSYDVDELQEDTKKVYDILQKLGANLNIPNVICDDYEVSEKNLQLLISLQSYMEQQKTNFNEDIEYIRCRMFGPQEPLTIKERFIPPLPFGFCTPKVSKKHNTDTIDYNIDTNEFHQIKLRKTLKSDKYVSEYIGEDVECEFEKLQKVMSKKDSARPNKIYSLKCKPFANSVLFCEDDEEIYDEASTLTTTTDFSENKYYNWESNKMNTSSSPKEKVILEGVPIQLIEPSRTTLQAYQELLLITASFPSTSCGQKQNYKLTLRGRDALSLLKRRYEQLFHMPTALCRIIPPDIVDESAFLPALEKLKKKKLKLKSKKKKHLSTVKECVNTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00692849;
90% Identity
iTF_00692849;
80% Identity
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