Ejap005329.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000058.1:134062-138539[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00028 5.8 8.9 0.1 21 46 185 210 180 213 0.88 2 5 0.0035 73 5.3 0.1 21 48 213 240 211 244 0.86 3 5 0.00044 9.2 8.2 0.4 21 44 241 264 237 271 0.90 4 5 0.076 1.6e+03 1.1 0.1 22 44 270 292 265 296 0.81 5 5 6e-06 0.13 14.2 0.1 21 46 297 322 289 326 0.90
Sequence Information
- Coding Sequence
- ATGATCACAAAATCAGCTGTGGTAAACCATCAAGCATCAAAACAGAATGGTACAAAGAGATCAAAGAGAAAATCGGCCTTAGTGAAACAAGAACCTGAATGGGATGACGAATCTGCGAGTCCATACTGGGTTGTGCCAGTGGAATGTGTGATCACCGCACCTTTGTCAGGCGATCAGTCTGAAGGATTTGGCGAGGATAAATATAAACCTATGGCGGAAATGAGCATTTCTGAGGGGTCCTCATCCTGCGACAATCTAGACCTTACTGTCAGAAGTGGCCTCGTGGAAGACACGTGTGAACGTATTAAAGAAGAGTCCTTTATAgaaaatgaGGATGTTCCTGAAGATCTTTATAATACGGAGCATATGGTCAAACCCGACCTGGACATTGGATCAATGGTTCTCCAGCATTATTTGTCACCGGATCCTTTCTTATTTAGTATGGAGATGGTCGAAACTGATTGGCAGTCATTCAATCAGGCATATGAAGAAGATGGTTATGTGCTCAGCAATTCGTCGCCCAATAAAGACATTGTTGACAATAATAACAGAACTGAAAAAAAGCACAATTGTCCCGTATGCAATGTCAAATTCAGCTCGAATAGTAACCTGACAAGGCACATGCGCCTGCACACGGGGGAAAGACCGTTTGTGTGCCAAATATGCGAATCGAGGTTCACCGATTCATCTCGACTGAAAGAACACATGAGGATTCATACCGGTGAGAAACCATTTACATGTACGACGTGCCAAATGAGATTCAGAACTTCTAGCCATTTAAACAGGCATAACAGGGTGCATACGGACAAAAGGCCGTACGCTTGCCAAATCTGTGGAGCGAGGTTCGGGGATCCCAGTAAACTGAAGACTCATATCAGAGTGCATACCGGAGAGAAACCGTTCAGCTGCGAGTTGTGCAATGCTAAATTCAACAATTCCAGTAATCTGAATAGACATCTgcatattcacaataaatttatactattgAAACAGCAGAAGGGGAAAACTGCCAAAAAGGAACAAaagtaa
- Protein Sequence
- MITKSAVVNHQASKQNGTKRSKRKSALVKQEPEWDDESASPYWVVPVECVITAPLSGDQSEGFGEDKYKPMAEMSISEGSSSCDNLDLTVRSGLVEDTCERIKEESFIENEDVPEDLYNTEHMVKPDLDIGSMVLQHYLSPDPFLFSMEMVETDWQSFNQAYEEDGYVLSNSSPNKDIVDNNNRTEKKHNCPVCNVKFSSNSNLTRHMRLHTGERPFVCQICESRFTDSSRLKEHMRIHTGEKPFTCTTCQMRFRTSSHLNRHNRVHTDKRPYACQICGARFGDPSKLKTHIRVHTGEKPFSCELCNAKFNNSSNLNRHLHIHNKFILLKQQKGKTAKKEQK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00689642;
- 90% Identity
- iTF_00689642;
- 80% Identity
- iTF_00689642;