Ejap035955.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000926.1:91665-95963[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00014 3 9.8 0.1 21 44 172 195 164 203 0.86 2 8 0.036 7.6e+02 2.1 0.1 21 43 200 222 194 233 0.81 3 8 0.0036 75 5.3 0.0 21 46 256 281 249 288 0.86 4 8 0.069 1.5e+03 1.2 0.1 26 44 289 307 280 315 0.81 5 8 0.00041 8.5 8.3 0.0 22 44 313 335 309 343 0.86 6 8 0.071 1.5e+03 1.2 0.1 14 32 332 351 329 363 0.73 7 8 0.0013 27 6.7 0.1 21 47 368 394 359 399 0.81 8 8 0.00016 3.4 9.6 0.1 22 45 397 420 391 425 0.87
Sequence Information
- Coding Sequence
- ATGACGAATGCAGCTGAAAACAGTGTATCCGTAGTCAAAATAGAAGTAGACGATTTTTTTTCCGAAGATAAGGCTCCTTCACTATCAAATAAGTTGCTCATTGTCGACGATAAAGTGGACAATATCCTCGTAAAGGCTGAGCCCGAGGATGATACTGCCTCGTCTCCAAACCCCCGTTCCAGTACTTCTATTAGTGATATAAAAGTAGATTTATTTGAAGTCCCTGTTGAATTTGACACACTCATTAAAAAAGAACTGGATGTAGCATCTCCAAAAGTACAATCTAGTCATCCCGCAGCACAATCTCTACCTATCACCAAGgtGAAATTGCGATCAATTAAGAAAGAGCCAAAGCTGAAGAAGAAAACTAAACAGACATCAGCTCAGAACAAATATGCCAACTACATTACATGCTCACCATCTGATAATGGATTAAAGGAGTTTTTATGCAAGTTTTGTAAttctaaatttgattatttgagTGATGTAACCAGACACATAAGAACTCACACGGGTGAAAAACCATTTGTGTGTGAAATATGTCAAGCTAAGTTTAAACAGTCCAGTCATCTGGTGCAACACAAAAGGACACACACCGGTGAAAAGCCATATAGCTGTGAAATGTGCTCCGCCAAGTTCACACAACTCAGCAGTTTGACATATCATAAAAGAACTCATACCGGTGAGAAGCCATTCATATGCGAGATGTGCAGCAAGAAATTCTCAAGAATAAGCAGATTGTACGCACATAAAAGGACGCACACCGGCGAGAAACCTTACAGCTGTGAAGTATGcaacaagaaatttaaagaGTATAACAATTTGAAACATCACGTACGAACACATTCATTGGTGAAGTCTCTCATTTGTGGAATATGCGATGCTACTTTTACGAGGGCCAGCAGTCTGATAAGGCATAAGCTGATACACACCGATCAAAAACCGTTTAGTTGTGAAATATGTGATGCAAAGTTCAAACAGTCTGGTACACTGAAGCATCACAGACGAACTCATACTGGTGAAAAACCCTTTGCATGTGACGTATGCGGTGCGGAATATTCGAGACTGGATAGTTTAACTCTACATAAACGAACGCACAGCAATGAAAAGCCGTTCCGCTGTGAAGTTTGTAACGCAAGGTTTAAACACTCCAACTATTTGACAAAGCATAAGCGGATACATAGCGACAAGAAACCGTTTGGTTGTGATTTATGCAGTTCCACGTTCAGACAGGCCAGTTATCTAGCGAGGCACATGGAGTCGCATCGTCGACGTGACTCTATTAAATCCTAA
- Protein Sequence
- MTNAAENSVSVVKIEVDDFFSEDKAPSLSNKLLIVDDKVDNILVKAEPEDDTASSPNPRSSTSISDIKVDLFEVPVEFDTLIKKELDVASPKVQSSHPAAQSLPITKVKLRSIKKEPKLKKKTKQTSAQNKYANYITCSPSDNGLKEFLCKFCNSKFDYLSDVTRHIRTHTGEKPFVCEICQAKFKQSSHLVQHKRTHTGEKPYSCEMCSAKFTQLSSLTYHKRTHTGEKPFICEMCSKKFSRISRLYAHKRTHTGEKPYSCEVCNKKFKEYNNLKHHVRTHSLVKSLICGICDATFTRASSLIRHKLIHTDQKPFSCEICDAKFKQSGTLKHHRRTHTGEKPFACDVCGAEYSRLDSLTLHKRTHSNEKPFRCEVCNARFKHSNYLTKHKRIHSDKKPFGCDLCSSTFRQASYLARHMESHRRRDSIKS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00689587;
- 90% Identity
- iTF_00689587;
- 80% Identity
- iTF_00689587;