Basic Information

Insect: Eumeta japonica
Gene Symbol: -
Assembly: GCA_005406025.1
Location: BGZK01000926.1:162115-172552[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.032 6.7e+02 2.3 0.1 26 45 76 95 59 102 0.85

2 11 0.17 3.6e+03 -0.1 0.0 22 44 128 150 119 160 0.82

3 11 0.56 1.2e+04 -1.7 0.1 23 43 157 177 149 181 0.82

4 11 4e-05 0.84 11.6 0.1 21 44 183 206 172 209 0.87

5 11 0.021 4.5e+02 2.8 0.1 21 43 211 233 207 238 0.88

6 11 0.00055 12 7.9 0.0 21 47 239 265 234 270 0.87

7 11 0.0032 67 5.5 0.0 21 46 267 292 263 299 0.85

8 11 0.34 7.1e+03 -1.0 0.0 23 43 297 317 295 321 0.86

9 11 0.0093 1.9e+02 4.0 0.1 20 43 322 345 309 353 0.83

10 11 0.089 1.9e+03 0.8 0.0 23 52 516 545 513 547 0.87

11 11 0.00067 14 7.6 0.0 22 48 543 569 534 572 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.032	6.7e+02	2.3	0.1	26	45	76	95	59	102	0.85
2	11	0.17	3.6e+03	-0.1	0.0	22	44	128	150	119	160	0.82
3	11	0.56	1.2e+04	-1.7	0.1	23	43	157	177	149	181	0.82
4	11	4e-05	0.84	11.6	0.1	21	44	183	206	172	209	0.87
5	11	0.021	4.5e+02	2.8	0.1	21	43	211	233	207	238	0.88
6	11	0.00055	12	7.9	0.0	21	47	239	265	234	270	0.87
7	11	0.0032	67	5.5	0.0	21	46	267	292	263	299	0.85
8	11	0.34	7.1e+03	-1.0	0.0	23	43	297	317	295	321	0.86
9	11	0.0093	1.9e+02	4.0	0.1	20	43	322	345	309	353	0.83
10	11	0.089	1.9e+03	0.8	0.0	23	52	516	545	513	547	0.87
11	11	0.00067	14	7.6	0.0	22	48	543	569	534	572	0.89

Sequence Information

Coding Sequence: ATGTCCAATCAAAAGCTACCTGACAGCGTTGAGAAGCAGGATGTCTGTATCAAGTTGGAGACTGAAAACTGTAGTTCTGAATGTCAGAACATCCAGATAAAACAGGAATGCGTTTCTCCAAGAACAGAAGATGACACTCTGGCGACCTCCATTGCTACTTATAGAGAGTGTGCATCAAAAGTGCCGTTTAAAACTGAACAAACCACGTGCACTGTCAAGTCGTTCAGTTGCGATATATGCGATTCAATATTTAGTAGATTAAATGAGTTGCGGAAGCATGTACGCACCCACAGCAATAGAAAAACCTATAGCTGTGATATATGTAGTACGAAGTTCACGTCTTGTAGTCATCTAAAAGTACACAAACGGATACATACCGGCGAGAAATCGTTCTCTTGCGACGAATGCACGGCCAAGTTCGTCACGTTGCAGGATCTGCGCAGGCACAAACGCACGCATTCCGGCTTGAAGCCGTACAGCTGTGACGAGTGCTGCGCTAAATTCACAGCCTCCAGCAGTCTAAAAGCGCACAAGCGCATACACAGCGGGGAGAGACCGTTTGTTTGTGGGACGTGTGACGCGACCTTTAGAAGAGCCAGCGATCTGCGTAGGCACATCCGAGATCACACCGGCGAGAGGCCGTACAGCTGCGAAGTGTGTAATGCGAATTTCACCGCCTCTAGTAGTCTAAAGGTACACAAACTGATACATAGCGGCGAGAGACCGTTCTGTTGTGAAGTATGCGTTGCTAAATTCAGGAAAGGGAGCGACTTGAAAACCCATATGAGAGTGCACACCGACGAGAAGCCGTTCAAATGCGATATTTGCAATATGAAGTTCAAGAGTTCTAGTAATTTGGCCATGCACAAACGTGTGCATACCGGATTCAAACCGTTCAAATGTGAAATATGCAACTCAACCTTTTCACATTGCAGCACATTGAAGAAGCATAAATTTGTTCACACCGACGAACACCCGTTCAAATGTGACGTATGCGAAGCTATCTTCAAGACCTGTTACAGTTTAAACAAACACAAACGCCAACACACCAAAATGGGACGAAGAAGGTCTATGACTCAGGGCCTGCCCAAAAGGTATTCCCTATCGAAAAGGTTAAAATATTCGTCCGGAGTGGCTTGTGATCGCGACGCCTCCGGTGGCTCCTTAAAGTTTTTCACCTCGATCCAAGAGCTGGCCGAGCGCGTCGTGGAGCGCGAGATCTACGTTAAGGCTAAGCGCGAAGACCGCCGCCCCTTCCCCGGGTATGCCCGCACCACATCACCCGACACTTATCGGGCCGATGATAGTTGTATCGATGCATTCATCAAGCAAGAGTTAACAATCGGAAAGACGGTTATACATCGTCTGCCGGCCAGGATGCCTCCCCACATTGCTaaagTGCCTACGACCGAGAGACCGCTGGTCAAACAAGAGGTCAATGAGACTGAACAACTGAAGGATTGTCACCAGTCCACGATGACCGGTGACAAAGTTCATACCGCTTCTGGAATGCTGCATACGCACACGCTCCTGCACACCGACCAGAAGCCATACAACTGTGATCTCTGTGATGCGAACTTCACTCTGTCGGATAGCTTAAAGGTGCACAAACGAATACATAGCTTAGACAAGCCGTTCGGTTGTAGCATGTGCGAAGCGATGTTCAGGAAGGGCAGCTATTTGAAACAGCATATCAAACGGAAGCACACCGACGGAACTCTGGTCTGTTAA
Protein Sequence: MSNQKLPDSVEKQDVCIKLETENCSSECQNIQIKQECVSPRTEDDTLATSIATYRECASKVPFKTEQTTCTVKSFSCDICDSIFSRLNELRKHVRTHSNRKTYSCDICSTKFTSCSHLKVHKRIHTGEKSFSCDECTAKFVTLQDLRRHKRTHSGLKPYSCDECCAKFTASSSLKAHKRIHSGERPFVCGTCDATFRRASDLRRHIRDHTGERPYSCEVCNANFTASSSLKVHKLIHSGERPFCCEVCVAKFRKGSDLKTHMRVHTDEKPFKCDICNMKFKSSSNLAMHKRVHTGFKPFKCEICNSTFSHCSTLKKHKFVHTDEHPFKCDVCEAIFKTCYSLNKHKRQHTKMGRRRSMTQGLPKRYSLSKRLKYSSGVACDRDASGGSLKFFTSIQELAERVVEREIYVKAKREDRRPFPGYARTTSPDTYRADDSCIDAFIKQELTIGKTVIHRLPARMPPHIAKVPTTERPLVKQEVNETEQLKDCHQSTMTGDKVHTASGMLHTHTLLHTDQKPYNCDLCDANFTLSDSLKVHKRIHSLDKPFGCSMCEAMFRKGSYLKQHIKRKHTDGTLVC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00689585;
90% Identity: iTF_00689585;
80% Identity: iTF_00689585;