Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.7e-11 7.8e-07 30.7 0.2 3 50 22 69 20 101 0.85

2 2 3.5e-05 0.73 11.2 0.0 127 150 131 155 113 198 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.7e-11	7.8e-07	30.7	0.2	3	50	22	69	20	101	0.85
2	2	3.5e-05	0.73	11.2	0.0	127	150	131	155	113	198	0.77

Coding Sequence: atgatataCCGTCTATCGGCGGACCTGTTTGCGGATGCGCTACCAGCGTGGCGCAGCGTGCGCGGCGTGTGCGCGCGACTGGCGCGCTGGCGCCGCCTCGACCCGCGCCTCTACTCCGACGCCTACGTGGCTGACTGCCTGCCCAAACTCCTTGCACCTTATATCAGGCATCAAttaaTCCTTTGGAATCCTTTGGCCGATGAAGACAATGACGACTATGAAAAAATGGATTGGTACAAGTGCCTAATGATGTACGGCTTACGTGCCGACCCTCTATCGAGTGACTCCGAGGGCTCGGAGCCGAACGGCGAAGCTGAAGGCGAATACGCAGACGATGGAGAGTTGACCGAAGATAGAGTCCGAGATGACCAGGACTTGCTGTTGGTGCCGATGCTCGTGCATCGTGCTGTAATACCTAAGCTTACTGagCTAGTCGAACACGCTTGGGATCCCATGTGTGTCCGAGCGTGCGTCCGTCTTCGCGGGCTCCTGCTGCGCGCGTGCAGCCTGCCGCCGCGCGCCTCGCCCGCGCTGCGTCGCCTCGCGACGACGGCCCGCGTGCGCCTGGTCGCTGCAGTCGCAGCTGATGTCTACTTACCTGCTGTGCCTCCGCAagtATGGGAAGgcagcgccggcggcggcgcatTCTGGCGCCGCTGCCTGGGCGCCGGCGTGCGGTTGCTGCGCGCATCACTGGCGCTatgcgcgccgccgccggaaCTGCATGCTGATAGCGTTGTGCTCAATATTATTGGTACGCTTTGTACGGCGGCAGCAGTTGCGCCTCCCACagccgcggcgggcgcggcggcggcgctagCGTCGACGCTGCCGAGAGACACGCCGCTACGCGCTCTCGCGCTGCGGCGACTGGCCACGCTCGCGCAACACGCGCTCAACAATCTACACTCTGATAACCCTTTACATTTGAAAGCATTAGAGCAGGCGCGCTCCGTACTGGCCGAAGCGCGCTCCATCCGCTGA
Protein Sequence: MIYRLSADLFADALPAWRSVRGVCARLARWRRLDPRLYSDAYVADCLPKLLAPYIRHQLILWNPLADEDNDDYEKMDWYKCLMMYGLRADPLSSDSEGSEPNGEAEGEYADDGELTEDRVRDDQDLLLVPMLVHRAVIPKLTELVEHAWDPMCVRACVRLRGLLLRACSLPPRASPALRRLATTARVRLVAAVAADVYLPAVPPQVWEGSAGGGAFWRRCLGAGVRLLRASLALCAPPPELHADSVVLNIIGTLCTAAAVAPPTAAAGAAAALASTLPRDTPLRALALRRLATLAQHALNNLHSDNPLHLKALEQARSVLAEARSIR*

Sequence clustering based on sequence similarity using MMseqs2