Esab001081.1
Basic Information
- Insect
- Eumerus sabulonum
- Gene Symbol
- -
- Assembly
- GCA_951905685.1
- Location
- OX645060.1:20840111-20841610[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.18 1.8e+03 0.3 0.1 22 43 216 237 211 242 0.81 2 8 0.00024 2.4 9.5 0.1 21 49 243 270 238 273 0.85 3 8 0.0012 12 7.2 0.2 21 48 298 325 277 329 0.84 4 8 0.00032 3.3 9.0 0.1 21 45 326 350 322 358 0.89 5 8 0.0028 28 6.1 0.1 18 47 378 408 368 414 0.81 6 8 0.47 4.8e+03 -1.1 0.0 22 46 411 435 408 441 0.76 7 8 0.0018 18 6.6 0.0 23 45 440 462 433 466 0.90 8 8 0.0026 26 6.2 0.1 21 48 466 493 463 496 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGCGAGATGACACAAATCGAATTCTCCGATATGGTCAAGGACGGCAACTGCACTTTCTCCGACTGGCCGGATGAAGATGTGGACGGCGACGACGAGCACATGACGCAGTTCCTGCTGACCGAGGATATGATCAAGCAAGAGCCCGAGTTCATAGTTGGTTCGGACGACGTTCAAGAAGAGCAGAAGATTCGAGCTTACCTGAAGAAGACCGAAATCGATGAAGAAGATCGCAAGCAACTCAACTGGCTCACATGTATGGTTTGCGACGAACGTTTTCTATCGACCAAAGAACTTTCGTTACACGTGCAGGAACACGCGAAGAAAGCCCTGAAGCAGGAGAACGACATCATGCAGCCTCCGAAGGAGTTCACCAATCGTCAAGCACCAAAAACGCCGTACACTGGATTCTCGCGACAGGAACTGTTCCAGGACTACATAAATATCAGCGTCGAATTGGATGGTAAGCCGACATATACTTGTAAGCTCTGTCCGAATAAGAATTACGCGCGGCAAGTGTCGATTCGGAACCATATGCGTATTCACGAGAATCCCACATACAAGGAACGCTCCTGTCACATCTGTCACAAGACATTCCTGCGCCGCGATACGCTGCTAGTGCATTTGCGCACCCACACCAACGAACGCAAGTACAAGTGCGACATCTGCGAGGCTGCCTTCACGCATTCCAGCTCGTTAGTGTCGCACAAACGCATTCACACCGGCGAGAAACCGTACACCTGCGCCATTTGTCAGAAATCGTTTCGCGAGTCCGGACAACTCTCCGCCCACAAGAGGATCCACTTCGACAAACTGTTACAGTGTCCCAAGTGCGATAAGAAATTCACATCCAACAAAACGCTTCGCGTACACTGCCGAACGCACACCGACGAACGTCCGTACACGTGCAACCTTTGCGGCAAGATGTTCCGCTGCACTACCAGTCTAACTACTCATCTTCGAGTCCATACCGGCGAGAAGCCGTACAAATGCGAGATTTGCTCCTACGCGACCAAACAGTCGGGTTATCTGCGCACGCACATGCGAACTCATACGGGTGAACGACCCTACAAATGCACCTACTGCGATAAGGCGTTCTCGGAGAAGAAACGCCTTGTGACCCACACTCGCAGTCATACCGGCGAACGTCCCTACAAGTGCATCTATTGCGATGCGGCCTTTGCCCGAAACGACAACCTCAAGTACCACCTAAGAACTCATACCGGCGAGAAGCCATACGAATGTAAAGTATGCGGCAAACGATTCGCTCAGGGTACCGCCCTCAGTATTCACACAAAAATCCATACCGGAGTCAAGCCATATTCTTGTCCACATTGCGAGATGAAATTCCGACAGAGTGGCACGCTCGTGACCCATCTGCTGATGCACACCAATGAACGTCCGTTCAAGTGTGACCTGTGCGAGAGAGGCTTCCGACAAAAGGCTTTACTCAAACGTCACGTTGCCTCTGCGCATGCAAACAGTATAGTCCAGTAA
- Protein Sequence
- MAGEMTQIEFSDMVKDGNCTFSDWPDEDVDGDDEHMTQFLLTEDMIKQEPEFIVGSDDVQEEQKIRAYLKKTEIDEEDRKQLNWLTCMVCDERFLSTKELSLHVQEHAKKALKQENDIMQPPKEFTNRQAPKTPYTGFSRQELFQDYINISVELDGKPTYTCKLCPNKNYARQVSIRNHMRIHENPTYKERSCHICHKTFLRRDTLLVHLRTHTNERKYKCDICEAAFTHSSSLVSHKRIHTGEKPYTCAICQKSFRESGQLSAHKRIHFDKLLQCPKCDKKFTSNKTLRVHCRTHTDERPYTCNLCGKMFRCTTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCTYCDKAFSEKKRLVTHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGEKPYECKVCGKRFAQGTALSIHTKIHTGVKPYSCPHCEMKFRQSGTLVTHLLMHTNERPFKCDLCERGFRQKALLKRHVASAHANSIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00241666;
- 80% Identity
- iTF_00688866;