Basic Information

Gene Symbol
stc
Assembly
GCA_947507515.1
Location
OX382203.1:9085488-9106268[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 3 2.1e+04 -4.4 1.6 15 19 608 612 607 612 0.81
2 14 0.11 7.6e+02 0.5 1.7 2 10 639 647 639 647 0.92
3 14 6.1e-05 0.42 10.9 18.1 4 19 655 670 653 670 0.93
4 14 1.2e-05 0.085 13.1 11.6 1 18 706 723 700 724 0.89
5 14 4.1e-05 0.28 11.4 10.3 1 18 765 782 765 783 0.98
6 14 3.4e-06 0.023 14.9 9.8 1 19 824 846 824 846 0.87
7 14 3 2.1e+04 -4.9 1.7 6 10 876 880 876 880 0.95
8 14 0.025 1.7e+02 2.5 7.3 1 11 886 896 886 897 0.93
9 14 1 7.1e+03 -2.6 1.8 4 10 901 907 900 907 0.89
10 14 1.5e-08 0.0001 22.4 16.9 1 19 913 931 913 931 0.99
11 14 0.27 1.8e+03 -0.8 2.9 11 18 960 970 960 971 0.86
12 14 0.0085 58 4.0 13.9 1 18 970 986 970 987 0.81
13 14 4.3e-07 0.003 17.8 13.0 1 17 1023 1045 1023 1047 0.83
14 14 0.0031 21 5.4 5.5 1 12 1053 1063 1053 1063 0.96

Sequence Information

Coding Sequence
ATGTCGCAGTGGAACAACTCGTACACTTACAACAACCAATATCAGCAAAACTCTAGCGGCTGGAACGGTGATCCAAATAGCCAGTACATGAATCAAGCCTATTACAGTAGGCCAGATGCCAATGGTCAATATGTGAGTTTTAATGAGTTCCTAACACAAATGCAAACCAGTAATATAGCCCCGCAGGCCAATCCCAACACTTTTAACAATGTACCATTTGAGAACTATCCTCCAGGTCAGTATAGCTATCAAAATGTGCCTTCATCATCTCAAACACAACCCAACAATTACAACTATGGGCCTTCAAGTATGCCTACCGAAGCTAATACCTTCCCAGAGAACCCACAAAGCCAGTTCAATGATCACAGATCAGACCCAACAATATACACTAAGAATGTGGCCTTCAAATCTAACCTCACAGCAACTGCAGTTGAATTTGTTCCAAAAAGTACTGCTTTGAACCCTTCCACCAGTAGCCAAAACATTCCAGAATCTGTCAATAGTTACATGGACGTACATGATAGTGGTATTGGGGAACCGAGCACCTATGGCAGTTCATCAGACCGCAATTGGAGACAGAAACCACAGAGTTCAACCCAAAGTGGCAATATAAAGAGTAAGCCTGTGCCAAATGGACATCCACAGGAAAACTATAAAAGCTCTGGTCGTAACCGTGATACTGTTCAACGAAACAATGAAGCCAATGTACGTCATGATAATGGGCTCCTAGACTATAGTAATAATGCTAGCAAAAATGAGCCTGATAATAGAGTAAATGAATCAAATACTAAGGGCCAAGATACAAGTCAACAGCAAGAGTCAAGTAGTCTGAGTCGAGAGGCACGTCAACGAAACTATGATGCTAGCAATAGAAATGAATCACGGTCAAACAATAAAATTCAAGATTCTCGGTCAAATAATAGGAATCAAGATTCGCGTCAACATAATGATAGAAACCAAGAAACACGACAAAGAAACTATGATGATAGAAACCAAGAAACGCGAAGGAACTACGAATCAAATAATAGAAACCGAGATTCTCGTCAAAATTATGATTCAAATGACCAAGGCCAAGAATCAAGGGAGTATGATTCTAATCAGCAATATGACTCCCGAAATGATCGTCGCAATCAATCGAAAGGTAACTCAAAACCTAAAGGAAAAGATGAAAACAGGACATTCTACAATAGTACTATTAGCAAAGACAGCCAAGATGTTAGAAGTGGGAGGGGGGAAAACTCTAGAGCAGAGGCATATACAAGGGAAGGAAATTCACGGTCAGAAGGCTCTAGGGGTGAAAGTTACTCAAGGGCAGAGGGCCCTAGGGGGGAAAACTACTCAAGACCCGAAGGCTCTGGAAGAGGTCAAAGAAATTGGGCAGGTACCCAACGTCCCCGAGGTGATCGCACACAAGATGATGAGCAGTATGCAAATAGTTACTACCAGAAAGAAGATAGAGTAGAGAAAGATAGGCCTGAAAGAATAGAAAGGGACAGAGGATATGATAGGGGAGAAAGAGATAGAGGATATGATAGAGTCAGGGGCTATGACAGGCAAGACAGAGATAGAGCTACTAAATCTAATCTCTCAAGCCCTGTGAGGTTTAAAAGCAAACATCAGACTGATCTAGCAATCAAAGAGATGACGCAACGTGAGCGTCTCACGGACCAATTAGACAAAGGAACGCTTGAATGTCTGGTGTGCTGCGATAGAGTGAGACAGACTGATCCAGTGTGGTCCTGCTCTAACTGTTACCATGTGCTGCATCTGAGGTGCATTAGAAAGTGGGCCATGAGTAGTGTAATTGAGGGCAAATGGCGCTGCCCAGCCTGTCAGAACATAAGCAAAACCATCCCCACCGAGTACCGTTGCATGTGTGGGTCAGCCCGCTCACCCGAATGGCAACGCAGTGGCGGAGCTCATACTTGTGGCAAGTCTTGCCGCAGGCCACGTACTTGCCCGCATCCTTGCACCCTGCTGTGTCATCCAGGACCCTGCCCGCCTTGCCAGGCCACAATCACCAAGCAATGTGGTTGCGGCTCAGAAACTCGCTCCATAATGTGCAGTAGCAAGTTACCTCAAATATGCGGACGAGAGTGTGGGCGCACGCTCAGCTGCAACGTACACTCGTGTGAAAAAGAATGCCACGAGGGAGATTGTGATGACTGTGACAAAACTGTTACCCAGTCATGCTACTGCCCGGCCGCCACTGAGCGTACAATCCCGTGCACTCGCGAATCCGGCTCGAACGCCCACTGGGAGTGTGCCCGCGCCTGCGGCCGCATTCTAGCGTGCGGCGCGCATGTGTGCCGCGCTATATGTCACGCGCCGCCGTGCGAGCCGTGCGCACTTCTGCCCGCGGCTGTACCCACCTGTCCCTGCGGAAAGATGCAGTTAGACAAGAACGCGCGCAAAGCATGCACCGATCCGATTCCACTCTGCGGCAACATCTGCGCTAAGCCGCTAACTTGCGGCCCTGTTGGAGACAAACACTTCTGCAAACTGGTCTGCCACGAAGGTGCGTGTCCCATATGCCCCGATAAAACTCTACTGCAGTGCCGTTGCGGACACTCAAGCCGAGAAGTGCCTTGTGCAGAACTGTCCGAGATGCTCAACAATGTGCTTTGCCAGAGGAAATGCAATAAGAAATTGTCGTGCGGCCGTCACCGTTGCCGCACCGCGTGTTGCGCCGCTACAACTCACCGCTGCACCGTATCGTGCGCTCGCTCGCTGCCGTGCGGATCGCATCGCTGCGAGGAGTTCTGTCATACTGGACATTGCCCTCCTTGTCCACGCGTTAGTTTCGACGAGCTCCGCTGTGAGTGCGGCGCGGCCGTGTTGATGCCCCCCGTGTCGTGCGGAGCGCGCGCCCCCGCGTGCTCGGGCCCGTGCCCGCGCACCCGCCCGTGTGGACACCCCCCGCACCACTCGTGCCACACCGGCGACTGTCCGCCGTGCGTCGTGCTCACTGCCAAGCGGTGCTACGGCTCACACGAGGAGCGGAAAACCATACCGTGTTCGCTAGAAGAGTTCTCGTGCGGTTTGCCGTGCGGCAAGCCGTTGCCGTGCGGGAAACATGCTTGCATCAAGATCTGTCACAAAGGACCTTGTGATGGTGGCAAATGCACCCAGCCGTGTACAGAGAAGCGTCCTGCATGCGGTCACGTGTGCAATGCACCTTGCCATTCATCAGCGGCAGTAGAGAGCGCGGGCAGCGTGTGTCCGTCGGCGGCGGCGTGCCGGCTGCCCGTGCGGGCCACGTGTCCGTGCGGCCGGCGCCGTGCCGACAGACCTTGTGCCGACAACTCACGGGACTACAACAAAATGATGAGTGCCTTAGCTGCAACGAAGATGCAAGAAGGTGGCGCCTTCGAAATTACCGAGCAACGGCCCGGCAATATGTTGAAAACTCTGGAATGCGATGATGAATGCAGAGTCGAAGCTCGCACTCGTCAGATGGCGTTGGCTCTGCAGATCCGGAACCCGGACGTGTCAGCCAAACTAGCGCCGCGGTACAGCGAACATATACGAACAACGGCCGCTAGAGAACCGGCCTTCGCACAGCAGATCCACGACAAACTTACTGAACTTGTACAACTAGCTAAGAAGTCGAAACAGCGAACCCGCGCGCATTCCTTCCCGTCAATGAATTGGCAGAAACGTCAGTTTATTCACGAGTTGTGCGAACACTTCGGCTGCGAGAGCGTCGCTTACGATGCTGAACCTAATAGGAACGTTGTCGCTACTGCTGATAAAGAAAAGTCATGGCTGCCAGCGATGAGTGTTATAGAGGTGTTGGGTCGTGAAGCAGGCAAGAGGAGAGTCCCCGGTCCTGTGCTGAGAGCTCCGCCTTCCGGCGCATCGTCCGCTGCACCCAGCACCGCCAAATCTACCAGCGGTTGGGCCACACTGACCTCTAAGTCCACAAACGCGTGGGGCGCTCGCAGTCAAACGAAACCGGCGCCACCCGAAGCAAAGATAGATTACTTCGACAACCCGCCGGATAACTAG
Protein Sequence
MSQWNNSYTYNNQYQQNSSGWNGDPNSQYMNQAYYSRPDANGQYVSFNEFLTQMQTSNIAPQANPNTFNNVPFENYPPGQYSYQNVPSSSQTQPNNYNYGPSSMPTEANTFPENPQSQFNDHRSDPTIYTKNVAFKSNLTATAVEFVPKSTALNPSTSSQNIPESVNSYMDVHDSGIGEPSTYGSSSDRNWRQKPQSSTQSGNIKSKPVPNGHPQENYKSSGRNRDTVQRNNEANVRHDNGLLDYSNNASKNEPDNRVNESNTKGQDTSQQQESSSLSREARQRNYDASNRNESRSNNKIQDSRSNNRNQDSRQHNDRNQETRQRNYDDRNQETRRNYESNNRNRDSRQNYDSNDQGQESREYDSNQQYDSRNDRRNQSKGNSKPKGKDENRTFYNSTISKDSQDVRSGRGENSRAEAYTREGNSRSEGSRGESYSRAEGPRGENYSRPEGSGRGQRNWAGTQRPRGDRTQDDEQYANSYYQKEDRVEKDRPERIERDRGYDRGERDRGYDRVRGYDRQDRDRATKSNLSSPVRFKSKHQTDLAIKEMTQRERLTDQLDKGTLECLVCCDRVRQTDPVWSCSNCYHVLHLRCIRKWAMSSVIEGKWRCPACQNISKTIPTEYRCMCGSARSPEWQRSGGAHTCGKSCRRPRTCPHPCTLLCHPGPCPPCQATITKQCGCGSETRSIMCSSKLPQICGRECGRTLSCNVHSCEKECHEGDCDDCDKTVTQSCYCPAATERTIPCTRESGSNAHWECARACGRILACGAHVCRAICHAPPCEPCALLPAAVPTCPCGKMQLDKNARKACTDPIPLCGNICAKPLTCGPVGDKHFCKLVCHEGACPICPDKTLLQCRCGHSSREVPCAELSEMLNNVLCQRKCNKKLSCGRHRCRTACCAATTHRCTVSCARSLPCGSHRCEEFCHTGHCPPCPRVSFDELRCECGAAVLMPPVSCGARAPACSGPCPRTRPCGHPPHHSCHTGDCPPCVVLTAKRCYGSHEERKTIPCSLEEFSCGLPCGKPLPCGKHACIKICHKGPCDGGKCTQPCTEKRPACGHVCNAPCHSSAAVESAGSVCPSAAACRLPVRATCPCGRRRADRPCADNSRDYNKMMSALAATKMQEGGAFEITEQRPGNMLKTLECDDECRVEARTRQMALALQIRNPDVSAKLAPRYSEHIRTTAAREPAFAQQIHDKLTELVQLAKKSKQRTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVIEVLGREAGKRRVPGPVLRAPPSGASSAAPSTAKSTSGWATLTSKSTNAWGARSQTKPAPPEAKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00633319;
90% Identity
-
80% Identity
-