Etes006390.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382220.1:6514309-6517466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.03 1.8 9.4 4.2 1 23 247 270 247 270 0.97 2 18 0.041 2.5 8.9 1.7 1 23 275 298 275 298 0.96 3 18 6.9 4.2e+02 1.9 1.5 2 23 302 323 301 323 0.91 4 18 0.00045 0.028 15.1 0.6 1 23 328 351 328 351 0.97 5 18 0.055 3.4 8.5 1.9 3 23 415 436 413 436 0.91 6 18 0.0011 0.066 13.9 1.9 1 23 442 465 442 465 0.94 7 18 0.015 0.89 10.3 0.5 2 20 469 487 468 489 0.94 8 18 0.062 3.8 8.4 0.0 1 23 497 520 497 520 0.92 9 18 0.34 21 6.0 1.4 1 23 525 548 525 548 0.95 10 18 0.0056 0.34 11.7 0.3 2 23 561 582 560 582 0.95 11 18 0.055 3.4 8.5 1.2 1 23 588 610 588 610 0.96 12 18 0.4 24 5.8 0.1 2 17 616 631 615 632 0.84 13 18 0.00054 0.033 14.8 0.4 1 23 646 668 646 668 0.98 14 18 1.7 1.1e+02 3.8 0.8 3 23 674 694 673 694 0.77 15 18 0.0007 0.043 14.5 0.5 2 23 710 732 709 732 0.96 16 18 2.5e-05 0.0015 19.1 2.9 1 23 738 760 738 760 0.99 17 18 0.00074 0.045 14.4 5.5 2 23 767 788 766 788 0.96 18 18 0.043 2.6 8.9 3.9 1 23 794 817 794 818 0.95
Sequence Information
- Coding Sequence
- ATGGACACCACAGCCAACCCGAAAACCCTGGATCTTCTAAACATAGAATGGCTGAAATCCCGCATGAAAACTATCTGGACCTCGCCGAAGTACTGTGCCCTCTGTCTTACCTCTGACGCGGAGTATTTTGAGCTATGTATGCAGTTTGCAAGCAATGAGGATATGTCTACAAAGCCACTGAGAGAAGTTGTCAACTATGTGTTCAATTTTGATATTGGAGACTACATACCAAGTGACTACATATGTGTGCAATGTACAGAGAAAACTATACAAACATACATATTCATAACACACACTAAGAAAATGTTCCACATCCTAAACAACTGCGTGAACGATATGAACTCAAAAGTGAACGATATAGACAATACTCTGAGTGAAGACATACTATATGATGATTCAAATGTAATGATTGTTGTTGAGTATGATCAGGAAACCTATGATTTAATTACCGAGTTGAACTCCGGTAACAATGCTATTTTAACAAAAGAACCATTTGTTGTTAAGAAGAGCAAACCTCCAAAACCAACTGTTAAAGTTGATGTTAAGAATAACAAAGAAAATAATAGGCCGGTAGTTATCGCTACACCGAGAGTCATCAAACATCCAAGAACAAAGGAGGTGAGGAATGTAAGCTACGAAGAAAAGGTAGCGACTCCTAACGTCACGTTAAGAGAAGGTAAAATTGTAATCGAGCCATTGGTAACCAACAGTGTCCCATCAACGCCGAGATTTAACACCTATTCCTGTAATTCATGCACGTGTATTTTTACAACATACCGATCGTTGAAGGAGCATGAAAAAGTTAAGCATAATTCTGTTGTCTTTAAATGCAGGTTCTGTGTCAAAATCTACAATACTCAACAGTACTTAGACGTGCACTACTTATCATCCCATCAAAAGTCTAGATGTAAGTTCTGCAAAGATTTATTTGACTCCGACAAGTTGAATAGTCACCTGAAAGAAATGCATCGTAAGTTTATCTATGCTTGTTCGGATTGCAGTTTAGTTTACTACAACTATGAGAAACTTGAAACTCATATGAAGTCCAGTCATTCAAAGCATTTTGCTGTATCTGACACGAAGCGGCAGTGTGTCATGTGCCTTAAGAACTTAAGGGATGTTGAAGTTAACAGTCATAAATGCAAGTTTTCTTGCTTAGATTGTCCTAAAGTTCCGTGCATCCACTACAGTTACCTCATGTCATATCGAGAACAAGTCTTAAACCATTCTCCGATGATACACTGCATAGACTGTGACTACACTACCAAACGGAAAGAACATCTGATCGGACATGTTAATCGAGAGCATTTAGATCATCATCCGTTCACATGTGACACATGTGGCACACAGTTTTACACAAAACTATCACTCAAGACACATGTACTACAATTCCATCAGGATCTAAAATGTCAGTACTGCGACTCTGATTTTAAAAACATGAAGTCGCTGCAGTCTCATCGAGAAGCATGTAAATTAAGTACTCGTCGATATAACTGTGCTGAATGTGTGGCAGCATTCGATACATTGGGAGAGTTGGAAAAGCATAGCGCAGTGAATCATAGCGAGTTTGTATACCCTTGCTTGTTGTGCACCAAAGAGTTTCCGTGCAAGGAGTTATTGGAAGAACACCACGCAAGAGTTCACAGTGGCATCCAATACAAAAAAAGACGGAAGATTATAGAGTGTACCCTATGTGATATCACATTCAAAAACCTTAAGGAAATGCTTGAGCATGAAAAACAGCATTCTCCCAACGAGATGTTTCCATGCAAAGCGTGTCCAAAGAGTTTTGACAGCCTTAAAAAGATATACATGCATAAACAAAGGCACTATTCTCAAAGAGTGAAGTGTCCGGGCTGTGACAAATCTGTTGCTGTGTCGTATTTCCTTCAGCATAAAGCTGTATGTCCATCTTTAAAGACAAAAGGGGCTTTGTATGTCTGTGAAGTCTGCGGTTCCGCCTTTCAATCGCAGTTGAACCTCAAAACACATAAGAAACTACACAATCAAAGAGAACCGTGTCTCCACTGCGGTAAAATGATCAAATCAGCCTCTATGAAAACGCATCTGGAACTCAAACATGAAATGTATGTAGTCTCGGATGATGGTAAAGGAATTCAACTTGTTAAGTGTTCATATTGTGATTATGTGACACGAAAGAAGGCTGATTTCGAAAACCATGTGAACAAAATTCACTTGAAAATCAAACCGTATCGCTGTGATGAGTGTAGTCGTGAATTTTGTGGGAAGTCGAGACTGGCCCAGCATATGCGAACTCATTCGACAGCCAACACATGTTATTGCTCTTACTGCGGGATGAAATTCGCTAACAAAGTGTGCTTAAAAATGCATGTCCGTAGACATACAGGCGAGAGCCCTTACGAGTGCAATATTTGCTTCGAGCGTTTCCGTTCTTCCAGTATTATGAAGACTCATCGGTTGAAAAAACACCATGACAAAACCATAGCATGTCCATTATGTGACTCTATGTATCACATAACAGCAGAGATGCGATTCCATGTTAAGAAGGTTCATTGGAAAAGTTCTGAACCGTTTGACTATAAAAAGATAGTTCCAGTAGAGCATCACCATTTGTTTCAAGATAGAAGACTGCAGAAGTTAGGCGACGATTCTTTGACTGAGAGTGTGAAATATACTGAAGTAGAATATACACTGCCAGCATAA
- Protein Sequence
- MDTTANPKTLDLLNIEWLKSRMKTIWTSPKYCALCLTSDAEYFELCMQFASNEDMSTKPLREVVNYVFNFDIGDYIPSDYICVQCTEKTIQTYIFITHTKKMFHILNNCVNDMNSKVNDIDNTLSEDILYDDSNVMIVVEYDQETYDLITELNSGNNAILTKEPFVVKKSKPPKPTVKVDVKNNKENNRPVVIATPRVIKHPRTKEVRNVSYEEKVATPNVTLREGKIVIEPLVTNSVPSTPRFNTYSCNSCTCIFTTYRSLKEHEKVKHNSVVFKCRFCVKIYNTQQYLDVHYLSSHQKSRCKFCKDLFDSDKLNSHLKEMHRKFIYACSDCSLVYYNYEKLETHMKSSHSKHFAVSDTKRQCVMCLKNLRDVEVNSHKCKFSCLDCPKVPCIHYSYLMSYREQVLNHSPMIHCIDCDYTTKRKEHLIGHVNREHLDHHPFTCDTCGTQFYTKLSLKTHVLQFHQDLKCQYCDSDFKNMKSLQSHREACKLSTRRYNCAECVAAFDTLGELEKHSAVNHSEFVYPCLLCTKEFPCKELLEEHHARVHSGIQYKKRRKIIECTLCDITFKNLKEMLEHEKQHSPNEMFPCKACPKSFDSLKKIYMHKQRHYSQRVKCPGCDKSVAVSYFLQHKAVCPSLKTKGALYVCEVCGSAFQSQLNLKTHKKLHNQREPCLHCGKMIKSASMKTHLELKHEMYVVSDDGKGIQLVKCSYCDYVTRKKADFENHVNKIHLKIKPYRCDECSREFCGKSRLAQHMRTHSTANTCYCSYCGMKFANKVCLKMHVRRHTGESPYECNICFERFRSSSIMKTHRLKKHHDKTIACPLCDSMYHITAEMRFHVKKVHWKSSEPFDYKKIVPVEHHHLFQDRRLQKLGDDSLTESVKYTEVEYTLPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00633022;
- 90% Identity
- -
- 80% Identity
- -