Etes019937.5
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947507515.1
- Location
- OX382197.1:11163741-11176066[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-61 6e-58 196.7 7.6 1 186 120 297 120 332 0.87 2 3 1.7e-10 5.8e-07 29.3 3.5 202 270 407 472 400 494 0.78 3 3 6 2.1e+04 -6.7 12.1 1 49 492 542 492 560 0.46
Sequence Information
- Coding Sequence
- ATGGGACATCGTTCAGTAATGGCTACACCCGATAATAGTGACGAGGAGAGTGGAGATGCCTTCACTGACGGTGACTTCGGGGACTCTGATGATGAAGCCGTTCTGGAACGCGATGACAACAAACCTTCTAGCATCCCTATCAATGAAACTATCAATGAAGAAGTTCAAAAAAAGATAAACAACGGCAATCCTAGTAATGGATATAAGGAACCTCTCGAAGAACTAAAAGTCAATGGACGTGAACAACAAAGAAATGATTTAGAAAATTGCAGTGACATGGCACCAGATTTAAGACGGGATTCACATGGTGACCAGAATCCTTCGATTGTGGGAATTATCGGAGATCAGCACAGCCACGCAGAGCAACGTCTGGCTGCGCGGCGAGCGGCGCGGGCTGAAGCCAGAGAGATCCGCATGAGAGAGCTGGAGAGACAGCAACGGGAACAAGAGGACCATGCTGACAAGGCGTATGATATGTACGCTGAGACAGTTGGCAGACGAGGTCCCCGACTGGCATCCCTCAGTCCGGCCGCGGTGCTCTCTCCGCGACGCAGTTCAGAAGATTCTGCTGATGACACCTTTAGCATCAAAGACTTGAGACATGAGCTGAAGGAAGTTGCAGAGAAGTTCCGCAAGGCGATGATTCTGAACGCGCAGCTCGACAACGACAAAGCGTCGCTCGGCTATCAGCTGGAACTGCTCAAGGACAGAATCGATGAGCTGCAAGAGGAATACGCACAATTACAGCGCGAGCACCGGGAGAAGTGTTCAGTGCACGAGCGAGTGTCGCGCGAGCACGCGTGCACGACAGAGGAGCTGGCGCGCGCGCGGGACGCGGTGCGTGCGCGTGACGCGGCGGCGGCGGCGGCCGGCTTCGTGTTCGCGGAGGCACCGCCCGGCGCCAGCGCCACTGGCTTCGGCGCCGTGCCGCCGCTAGCGCTGCTCTCGCACGACGCACACCGCATGCTCGGCGAACCAGACTCTACGCTCGTCATACTCATACTCATACTCAGCTTCGGCGCCGTGCCGCCGCTAGCGCTGCTCTCGCACGACGCACACCGCATGCTCGGCGAACCAGACTCTACGCTCGTCATACTCATACTCAGCTTCGGCGCCGTGCCGCCGCTAGCGCTGCTCTCGCACGACGCACACCGCATGCTCGGCGAACCAGACTCTACGCTCGTCATACTCATACTCAGCTTCGGCGCCGTGCCGCCGCTAGCGCTGCTCTCGCACGACGCACACCGCATGCTCGGCGAACCAGACTCTACGCTCGACGTGCGGTTGCAAAACCTGGTTACCTCAAAGCAGTCCCTGGAGTCAGAAGTGCGCAAACTGAAGCTCACGCTAAACGAAGAACGCGCCGCGAGACAAAATGGCGTCGCGAATCATAACGACGAGGATTATGAGAACGAATTGGAGAGTGTGCGCAAGGCGGCGGTGGAGGCGAAGGGTCGCGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGGTGGCGGCGAGCAGCGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGCGCGCGCCAGGACGAACACGACGACATCGAGGAACAACTCAAACAGGACCGCAGGAGGCTGCAGCGAGAGGCTCGAGAGGCTCTGAACCGGGTCGAAGAATTGGAGACAGAAAACAGCCACCTCACCAAGAGACTCGATAAGCTGAAGAACGCCAAATCTGCACTACTTAAGGACCTGTGA
- Protein Sequence
- MGHRSVMATPDNSDEESGDAFTDGDFGDSDDEAVLERDDNKPSSIPINETINEEVQKKINNGNPSNGYKEPLEELKVNGREQQRNDLENCSDMAPDLRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLASLSPAAVLSPRRSSEDSADDTFSIKDLRHELKEVAEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEYAQLQREHREKCSVHERVSREHACTTEELARARDAVRARDAAAAAAGFVFAEAPPGASATGFGAVPPLALLSHDAHRMLGEPDSTLVILILILSFGAVPPLALLSHDAHRMLGEPDSTLVILILSFGAVPPLALLSHDAHRMLGEPDSTLVILILSFGAVPPLALLSHDAHRMLGEPDSTLDVRLQNLVTSKQSLESEVRKLKLTLNEERAARQNGVANHNDEDYENELESVRKAAVEAKGRAARAEAEAALVAASSARLEAQLQRLRARQDEHDDIEEQLKQDRRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -