Egla016528.1
Basic Information
- Insect
- Eugnorisma glareosa
- Gene Symbol
- -
- Assembly
- GCA_947578425.1
- Location
- OX387984.1:1197494-1209769[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.25 21 6.4 0.2 1 23 267 290 267 290 0.94 2 11 0.0014 0.12 13.5 1.1 2 23 298 319 297 319 0.97 3 11 0.64 56 5.1 3.0 1 23 323 345 323 345 0.97 4 11 0.092 7.9 7.8 7.8 1 23 350 372 350 373 0.95 5 11 0.0029 0.25 12.5 0.1 3 23 380 401 380 401 0.98 6 11 0.001 0.091 13.9 0.3 3 19 410 426 409 429 0.94 7 11 0.011 0.96 10.7 2.2 1 23 435 458 435 458 0.94 8 11 1.4e-06 0.00012 23.0 1.6 1 23 464 487 464 487 0.98 9 11 0.0019 0.17 13.0 0.6 2 23 503 524 502 524 0.96 10 11 1.1e-05 0.00094 20.1 3.4 1 23 530 552 530 552 0.98 11 11 0.00063 0.054 14.6 0.2 1 20 558 577 558 579 0.93
Sequence Information
- Coding Sequence
- ATGTCTTTAATTACGTTAAAAAACGAGTTCAATGAAGACATACTAGCCTGCAGAGCTTGTTTGGCTACAAATAGGAAGTTGTACAGCATAAATCAGGACGAAGTTTTAAAATCTTACAAGAATCTTACTGGACAAAACGTATCTCCATATGACACATTACCGCAATACATTTGCAACTACTGCACAATTCTCTTGCTGAAATTTAACATATTCAGGGATCACTGTCAAAGAGCTACAATCTATTTAGAAGATGCCAGAATAAGAAATAAAAATGTTACAACAGAGTATTTAAACAATTTCCAACCCTACATACAACACAAAAAATCAGAAATGAAACAAATAAGCATCAATGAAAACGACATCACTAATGAAACTTTTTCAAACTTCAAAAGTGATGACACTGATGATCATTTTGACAATAATGATGACCACTGCACATACTCATCACTTAATACTGAAAACTTTAAAATATTCCCTGAAACAGCATACTCTTCATGCAATACAGAAAACCTCAAAATATATGCTGAAACGGTCAAAATCAAAATCGAAAATGACTTGCCTACTCTACCAGAGAAACCCCACAGAAATGACCATAAAAAGAAAAAAAGTACAACTGTAAGAAGAAAAAGTACGAAAAAGTCCGAGACAATCAAAAAGAAAGGGAAGTTTTTTGAAACCAAAGAGAATATGTCAGATTTTGAGAAAGCATTTGATGTAGAAATTACTGTTCTAAGCGAAGACCAGCAAATGAAAGATGTTTTAGATAGAAAATCTAGTTCGAACTATTTGCATAGCCCTTATAAATGTGAATTATGTTTCAAAGGTTATATGGGAGCTGACATTTTGAATAAACATGTTTTGTCTCAGCATGATCCAAGTCGTGGTAGCGTGGTATGTGAATTCTGTCAATTTCGCTACAAAGATCGAAGAGGATTGAACCAACATCTAAAAAGCCATCGACTAAAGTTCTCTTGCAAACAATGCTCATATATTTCTAGAACCACATTCAATGCAAAAGAACATTTTAAAATGCATGGTGGTCAAATGCACGAATGTCAGCATTGTGGGAAATCTTATGAAAAGCTGTCAAGCCATCTGTCCCACCTGCGGATACACCATCCGTCCGAGTTCATCTGGTGTGACGTGTGTGGGGAGGCTTTTATAGGCTCATTCGGTCTGAACGCGCACAAGAAGAGGGCGCATCGATATTTCCCCCTGCCCTCTGCTTGCCCCTCTTGCAACAAGCACTTCGTGGACAACACAGCGTTACAACGTCATTCAACGATCGGCGTCTGTAGCGAACATACGTGTCTACATTGTGGAGAGGGGTTTAGTGAAACCTTACAGTTGAGAGACCATTTGCTTCAAAAACATCGGAGTTGCAAGGTCTATTCTTGTGAGAAGTGCGACAAGACCTTTTCCCGTGAGTCGTTATACAGTGCGCATTACAGAAGAATACACGTCGATTCGAAAGATAAAGCGAGTAGAAAGAAGGACAGACCTTGGGTGTGTGAAGTGTGTGGGAAGACTTTACCGAATAAATGCGTATTATTGTACCATCAGAGGAACCACACCGGCGAGAAACCGTACCATTGTACGCAGTGCCCCAAGAGTTTCACCATGAGGAAACTGTTACAGTCGCATCTAAGAGTACACACCAGCGACCGACCCTACGCCTGCAAGTTATGTCCAAAAGCGTTCAAAGGATTATCGGCTTTAAGAACACATGAACATGTTTACAGTACGCCGCTGCATCAGCCCTTGTAA
- Protein Sequence
- MSLITLKNEFNEDILACRACLATNRKLYSINQDEVLKSYKNLTGQNVSPYDTLPQYICNYCTILLLKFNIFRDHCQRATIYLEDARIRNKNVTTEYLNNFQPYIQHKKSEMKQISINENDITNETFSNFKSDDTDDHFDNNDDHCTYSSLNTENFKIFPETAYSSCNTENLKIYAETVKIKIENDLPTLPEKPHRNDHKKKKSTTVRRKSTKKSETIKKKGKFFETKENMSDFEKAFDVEITVLSEDQQMKDVLDRKSSSNYLHSPYKCELCFKGYMGADILNKHVLSQHDPSRGSVVCEFCQFRYKDRRGLNQHLKSHRLKFSCKQCSYISRTTFNAKEHFKMHGGQMHECQHCGKSYEKLSSHLSHLRIHHPSEFIWCDVCGEAFIGSFGLNAHKKRAHRYFPLPSACPSCNKHFVDNTALQRHSTIGVCSEHTCLHCGEGFSETLQLRDHLLQKHRSCKVYSCEKCDKTFSRESLYSAHYRRIHVDSKDKASRKKDRPWVCEVCGKTLPNKCVLLYHQRNHTGEKPYHCTQCPKSFTMRKLLQSHLRVHTSDRPYACKLCPKAFKGLSALRTHEHVYSTPLHQPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064097; iTF_00712259; iTF_00446521; iTF_01064988; iTF_00301510; iTF_01532525; iTF_01063157; iTF_01533411; iTF_00929030; iTF_00302485; iTF_00041275; iTF_00044007; iTF_00043048; iTF_00040323; iTF_01534269;
- 90% Identity
- iTF_01064988;
- 80% Identity
- -