Crub040501.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424551.1:12091625-12116516[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.3 37 6.4 0.2 1 23 275 298 275 298 0.94 2 11 0.0017 0.21 13.5 1.1 2 23 306 327 305 327 0.97 3 11 0.78 97 5.1 3.0 1 23 331 353 331 353 0.97 4 11 0.28 35 6.5 8.2 1 23 358 380 358 381 0.95 5 11 0.0035 0.43 12.4 0.1 3 23 388 409 388 409 0.98 6 11 0.0021 0.26 13.2 0.5 3 19 418 434 417 436 0.96 7 11 0.0036 0.44 12.4 1.6 2 23 444 466 443 466 0.94 8 11 1.6e-06 0.0002 22.9 1.6 1 23 472 495 472 495 0.98 9 11 0.0023 0.29 13.0 0.6 2 23 511 532 510 532 0.96 10 11 1.3e-05 0.0016 20.1 3.4 1 23 538 560 538 560 0.98 11 11 0.0002 0.025 16.3 0.7 1 23 566 588 566 588 0.97
Sequence Information
- Coding Sequence
- ATGTCTttagttactttaaaaaacGAGTTCAATGAAGATTTACTAGCCTGCAGAGCTTGTTTGGCTACAAATAGGAAGTTGTACAGCATACATCAGGACGAAGTTTTAAAAGCTTACAAGAATCTTACTGGACAAGAAGTGTCTCCATATGACACATTACCGCAGTACATTTGTAATTACTGCACTATACTCGTACTGAAATATAATACATTCAGGGAACACTGTCAAAGAGCCACAATCTATTTAGAAGATGCCAGAATACagaataaaaatGTTACATCAGAGTATTTAGACAACTTTCAACCCTACATCCAACACAAAACAAcagaaataaaatgtataagCATCAAAGAAAATGACATCATTAATGAAAACCTTTTAAACTTGAAaagtgatgaaaatgatgatcatTTTGACAATTATGATGACCACTATATAAATTCATCACCAAAtccacaaaattttaaaaattatggtAAAAAAACCAATGACAAAAATGATCAATACACATACTCGTCATCAAATACTGAAAACCTCAAAATATATGCTGAAACGgttaaaatcaaaatcgaaaatgaCTTGCCAACCGTACCAGAAAAACCCCACAAAAATgtcaacaaaaagaaaaaaagtacaacagcaagaaagaaaagtataaaaaagtcCGAGACACTCAAGAAAAAAGGAAAGTTTTTTGAAACAAAAGAGAATATGTCAGATTTTGAGAAAGCATTTGATGTTGAAATTACTGTTTTAAGTGAAGACCAGCAAATGAAAGATGTTTTGGATAGAAAGTCTAGTTCAAATTATTTACATAGTCCTTATAAATGTGAATTATGTTTCAAAGGGTACATGGGAGCTGATATTTTGAATAAGCATGTTTTATCTCAGCATGATCCGAGTCGTGGTAGCGTGGTATGTGAATTTTGTCAATTTCGCTATAAGGACCGACGGGGATTAAACCAGCATCTAAAAAGCCATCGACTAAAGTTCTCCTGCAAACAATGCTCATATATTTCTAGAACCACTTTCAACGCAaaagaacattttaaaatgCATGGTGGTCAAATGCACGAATGTCGGCATTGTGGGAAGTCTTATGAAAAACTGTCAAGCCATCTGTCCCACCTACGTATACACCATCCGTCTGAGTTCATCTGGTGCGACGTCTGTGGGGAGGCTTTTATAGGCTCCTTCGGTCTGAACGCGCATAAGAAGAGGGCGCATCGACATCTCCCCCTACCCTCTGCCTGCCCGTCTTGCAACAAGCACTTCATAGACAACACAGCGTTACAACGTCATTCAACGCCCGGCGTCTGTAGCGAACAGACGTGTTTACATTGTGGAGAGGGGTTCAGCGAACCGTTGCACTTGAGAGACCATTTGCTGCAGAAACATAGGAGCTGTAAGGTCTATTCTTGTGAGAAGTGTGACAAGACGTTCTCCCGTGAGTCTTTATATAGTGCGCATTATAGAAGAATACACGTAGACTCGAAAGATAAAGCGAGCAGGAAGAAGGACAGGCCTTGGGTGTGCGAAGTATGTGGGAAGACTTTACCGaataaatGCGTATTATTGTACCATCAGAGGAACCACACTGGTGAGAAGCCCTACCACTGTACGCAGTGCCCCAAGAGCTTCACCATGAGGAAGTTGTTACAGtcccatctAAGAGTACACACTAGCGACCGGCCTTATGTTTGCAAGTCATGCCCTAAAGCGTTCAAAGGATTATCGGCTTTAAGAACGCATGAACATATACACTCGGGCGGTCAGACGAAATCATTGAAGAATAGAATAATTGAGTAA
- Protein Sequence
- MSLVTLKNEFNEDLLACRACLATNRKLYSIHQDEVLKAYKNLTGQEVSPYDTLPQYICNYCTILVLKYNTFREHCQRATIYLEDARIQNKNVTSEYLDNFQPYIQHKTTEIKCISIKENDIINENLLNLKSDENDDHFDNYDDHYINSSPNPQNFKNYGKKTNDKNDQYTYSSSNTENLKIYAETVKIKIENDLPTVPEKPHKNVNKKKKSTTARKKSIKKSETLKKKGKFFETKENMSDFEKAFDVEITVLSEDQQMKDVLDRKSSSNYLHSPYKCELCFKGYMGADILNKHVLSQHDPSRGSVVCEFCQFRYKDRRGLNQHLKSHRLKFSCKQCSYISRTTFNAKEHFKMHGGQMHECRHCGKSYEKLSSHLSHLRIHHPSEFIWCDVCGEAFIGSFGLNAHKKRAHRHLPLPSACPSCNKHFIDNTALQRHSTPGVCSEQTCLHCGEGFSEPLHLRDHLLQKHRSCKVYSCEKCDKTFSRESLYSAHYRRIHVDSKDKASRKKDRPWVCEVCGKTLPNKCVLLYHQRNHTGEKPYHCTQCPKSFTMRKLLQSHLRVHTSDRPYVCKSCPKAFKGLSALRTHEHIHSGGQTKSLKNRIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00685777;
- 90% Identity
- iTF_00301510;
- 80% Identity
- -