Edil002000.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Euglossa dilemma
Gene Symbol
GLIS3
Assembly
GCA_002201625.1
Location
NIJG01000029.1:2167647-2172716[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.00051 0.038 14.2 0.2 1 23 303 328 303 328 0.97
2 5 0.36 27 5.3 0.1 5 23 374 394 368 394 0.79
3 5 1.5e-06 0.00011 22.1 1.0 2 23 401 424 400 424 0.97
4 5 8e-05 0.006 16.7 2.3 1 23 430 454 430 454 0.96
5 5 2.9e-06 0.00022 21.3 0.3 1 23 460 484 460 484 0.95

Sequence Information

Coding Sequence
AAGATGCACCTCGAGGACTACCACGTGAACAGGAGCGAGGAGGATGTACAACGTGCAGTTTCGAAGAGCATAAAACAAGAGGACTTCAACACTCTGCACCTGACGCCTATTACCTCGATAAACGCCAGTAGTCAGCAACCCTGTTGGGTTACATCTCACGCGGACAGCATCTCGTCTCCAATTCTAGCCAGCAATTCCAGCCCTAGGGAGTACACCGACTGGGAACAGCTCACAACGGTCTTTCAGTATCCCTGTCAACCGTACTCGGCAACAGACAGGTCACCAAGCACTGGTAGCGAAGCCACCACGCCAACCTGGAACAATGTCATCCGCAGTGAAATGTCCGACTGTCCCAACGGACAACGGTTACCTTCCGTTGGTTCTGCCTTCTCGTTCTCAAGGACCTTCTGCAACACTATTTACCCGGAGTACCAGAGCTACCAGGACTATCAAGAGTACCAGGATGACGTGTCAGTGTCCTTGCCGCTTATCCTTCACAATCAAACAGAGGACCAAGCATTCAACGGGTCTATGCAGGCTGCCACGGATGAGTTTGATCTTAGTTTAATCAGAGGTGATCCTACGTCGCTGCTGTGCAATGTGGAGTCACCGTCCTCGCCGTCGTCCACGTATTTAGAGGAGCTTCAAGACCCGTTTTCTAATTTGAGTGGATCCTGTTACGCCGTTGGGCATTTGGTCTCTGGTCAACAGTCGTCAGTGTCCACGATGAACTTCGTTAACGACACTGGCTTGAGTGATGGGTTCGGGAATCAGGTTGTCTTGCCTAGAAACGAGGGTTTGTTGTTGACCGATAGAAGAGTGCCTGTGTCCAAGCCTACAGAGAACACGGAGAAACGGAGTAAATCATACGACTGTTCAACGACGGACGACAACTTGACGTCGACGTATCAGTGCCGATGGATAGATTGTGGCTGCGCCTTCGCCGAGCAGGAAGGCCTGGTTCGCCACATCGAGAGAAGGCACGTCGAGTCCTCCTCGTCGAACGCTCACGGACATGGAAGGCGGGTTCAAAGGGACAGGGACAAGGACAAAGACAAAGAAGGGGAATCCTATGGGGGTTCAGGAAGCGGGCAGGACGAATTCGCTTGCCTCTGGCAAGGCTGTCCGCGAGCTCGACCGTTCAACGCGAGATACAAGCTGCTGATCCATATGAGGGTTCATAGCGGAGAGAAGCCGAATAAATGTCCGTTCACTGGATGCAAGAAGGCATTTTCACGACTGGAGAACTTGAAGATTCACCAGAGATCTCACACAGGGGAAAGACCATACGCCTGTCAGCATCGTGGCTGCTCCAAAGCCTTTAGTAACAGCAGTGATCGTGCAAAACACCAAAGAACTCACTATGACACGAAACCATACGCGTGCCAGGTGTCCGGATGCGGGAAGAGGTACACAGACCCATCCAGCCTGAGGAAACACGTGAAGAATCACACAGAGTCAACGACACCGCTGTCCAACCTGTCGCTGACTTCAGACAGCAAGGCACCGGGTAGCATTGCTAACAGTTCGAGTAATTCGCGGCACGATCCGATTTCCACGAGCTCGAAGCATCAGCAACAGCAACAACAGGCACAAACGGCGATCGGCTACCAGGCGGAATCAAATTATCGAACGTATAAGACTTCGGAGTCTTACGCGGACGAGGACGCGGACCTGTTCCAGACGAATCTGTGTCAGGTCGATAGGATTTCCATGAACCTTGACAGCAATCAAGAGTACGTCCCGATTGAGTCTGTGAAACGCTTTCTTATAGACGACGTCAGCGGATCACACGTGGATGGTACAGGGTACCAGGTCGAGGATGAGGTTCCTGACTTCCAAGAGCTCGGGTCGGATATCGAGCAGCAGTTTCTTGAGCTTAGCAGCCTGGACGACGCGGTATTCATCGATGGT
Protein Sequence
KMHLEDYHVNRSEEDVQRAVSKSIKQEDFNTLHLTPITSINASSQQPCWVTSHADSISSPILASNSSPREYTDWEQLTTVFQYPCQPYSATDRSPSTGSEATTPTWNNVIRSEMSDCPNGQRLPSVGSAFSFSRTFCNTIYPEYQSYQDYQEYQDDVSVSLPLILHNQTEDQAFNGSMQAATDEFDLSLIRGDPTSLLCNVESPSSPSSTYLEELQDPFSNLSGSCYAVGHLVSGQQSSVSTMNFVNDTGLSDGFGNQVVLPRNEGLLLTDRRVPVSKPTENTEKRSKSYDCSTTDDNLTSTYQCRWIDCGCAFAEQEGLVRHIERRHVESSSSNAHGHGRRVQRDRDKDKDKEGESYGGSGSGQDEFACLWQGCPRARPFNARYKLLIHMRVHSGEKPNKCPFTGCKKAFSRLENLKIHQRSHTGERPYACQHRGCSKAFSNSSDRAKHQRTHYDTKPYACQVSGCGKRYTDPSSLRKHVKNHTESTTPLSNLSLTSDSKAPGSIANSSSNSRHDPISTSSKHQQQQQQAQTAIGYQAESNYRTYKTSESYADEDADLFQTNLCQVDRISMNLDSNQEYVPIESVKRFLIDDVSGSHVDGTGYQVEDEVPDFQELGSDIEQQFLELSSLDDAVFIDG