Edil011722.1
Basic Information
- Insect
- Euglossa dilemma
- Gene Symbol
- prdm10
- Assembly
- GCA_002201625.1
- Location
- NIJG01000031.1:1235064-1238778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.095 13.0 0.1 2 23 496 517 495 517 0.96 2 11 0.00041 0.031 14.5 0.3 2 23 530 551 529 551 0.96 3 11 0.0074 0.55 10.6 3.8 1 23 568 590 568 590 0.91 4 11 0.0048 0.36 11.1 2.6 2 23 599 620 598 620 0.96 5 11 0.00011 0.0084 16.3 0.3 1 23 627 649 627 649 0.98 6 11 0.036 2.7 8.4 2.1 1 23 656 678 656 679 0.94 7 11 0.00032 0.024 14.8 1.7 1 23 684 706 684 706 0.98 8 11 1.9e-05 0.0014 18.7 4.1 1 23 712 735 712 735 0.96 9 11 0.0014 0.1 12.9 1.7 1 23 768 791 768 791 0.97 10 11 3e-05 0.0023 18.1 2.4 1 23 813 836 813 836 0.97 11 11 0.0012 0.093 13.0 3.4 2 23 873 895 872 895 0.96
Sequence Information
- Coding Sequence
- TCAGTAAATTGGCCTACTGATCATTCGCTTTCCACATCGATGTGTGAACAACAAAAAAAAATGAATAATAATAAATTATTATTTTTAACTGTGGAATATGTGGAAGATCCATCACGGGAATATTCCCGTTTATTTCCAACATATGAACAAGTTTCCTTTTCACCTAGAGCTTCTTCTCCACTTTCTGATTTTGAACATCGTGTTAGTCCTCTTGATCCTAATATGAGTTCAGCTGCTAGATATTCACCAACTCCAGTACAGCTTCCACCATCTCCTTTTCATAATTCTGTTGTTGTATTACAAGGTTCATCTCCTTTAATATCCCCAACTGAATCAACTGAAAGAGCAAATGTTAACTATGTTTCTCAATTAACGCATCCAATTGATGCACAAAGTGTTCAACAATCAGATAGTTCTACTGACTTTGTTGCCAATGAAAATGAAGAACAACTGGTAGCTACTGTTGGTAGTGAATTGATTCTTATGCAAGAATCTAATTCTGGGTTAGAATCAGCAACAGCTCCATTGATGCTAACAGGAATACCAAGTACAGATTTTACATTAAGTAGAGATTTTCTTGTTATGCAAGATGACCAAATGAATGTCATAAATTCATTCAAGGCACAGAATCTTGATGTAGATGATCCTACACATCTTTCATCAGTTGCAGGAAATTCGAACAAAGAAAATAATACAGATCCTTTAGCTGCATCTAAGGAACAAGAAATTAATGAAATTTTAATGCCTACTGAAGAGAAAAAAGATGATGAAAAAAAGAACGTGAGACGTTCAAAACGTCGTATAAATGATAAAAAAAATTTTTGTTGTGATGACTGTGATGATCTATGTACCGGTGATAACTGCACTTCACATAATGTATGTACAATAGCAGATCAACCAGTACCATCACGTGCTATAGCAACACTGCCAGGGTCATATCTTTCCATAAATAAGTTATCTGCTTCTGAAGTTCTATCAGGTGGATCAGATTATGGAGTGTTTGCAAAACGTTATATACAAAAACGTACTCAGTTTGGGCCTATAGAGGGTATCTTATATCCTTATGATGGCACACCATTTAGAAATGAATTGCCATTACTCTATGAAACTGAAAATAAAGAGTTTTTAAAAGTAGATGTATCAAATGAAAATGCTTCAAATTGGATGCGTTTTGTTAGACCTGCATTAACATATAAAGATCAAAATGTGGTAATTTGTCAACAACGCGATGGAATAGTATTTTTGACTACAAGAAGTATTTTACCAAAGGAAGAATTAAAAGCTGGTCCTAGTACTGATTATGCAATTCGTAGAAATTTAATACCTCTTAAATCTATACAAGAAACAAAAGATGATAAAGAGCACAAAAATCAATTATCAACTTGGTCACGATTAGACGATAACCATTCCCGGCGTATGAAAGTATTTCGTGGTAGAAATTTAAAAGAAAAAGAAAATTCAAGACAAAATAATTCGAAGGAATGGAAATGTTCTGTTTGTGGCTTGATTTTTAGAAAACCACTCTTGCTTAATTTACATACTCTCGTTCATAACTCTGATAAAATAAAAACTAAAGTTCAATCCACAGTCTGCCCGCAATGTGGACTACAATTTCAAAAACAAAAAGAATTGATTAATCATATTTCACAGCATGGGAGATTATCTCTAAAAAAAGCAAAACGATTGTCTTCTTTGTCTACATATAAGTGTTCAATGTGCTATAAACGTTTTGCAACAAAAGTGCGATTACAACAGCACTGCTTAGTGCATGGTGCTGAAGACCAAAAACCACTGCCATGCAACATTTGCTTTAAAAGATTCATGAATAATTCAGCACTCTCCTGTCATTTAAAAACACATAGAGAAAATAAACAAGTATTTGAATGTCCAATGTGCAGACAGCTATTTAGTCAAAGCATAACATTAAAAGATCATATTGAAACTCATAAAAATGAAGATGGCACATTTAGCTGTCCTTACTGCCAAAGAATATTTCTTAAATATTCGGTTATTCGTAAACATATTAGAGCACATCACTGTGAAAGGAAACACAAATGTCAAATCTGTGCAAAACGATTTGCCACAGTGGATAAGTTACAGATGCATCTACTAAAACATTCTGATCATAGAGAGTTTCATTGTGCAAACTGTGGAAAACAATTTAAAAGAAAAGATAAATTAAAGGAACATATGACAAAATTACATAATTCACAAACAGCTACAGAAGAACAAATGACACAAGTTACACAAACCAAAAAATTTGTTCCAAAGGTAAATCCTAATGATTATAATCGTTTCATTTACAAATGTCACCAATGCCTAGTGGGTTTTAAACGAAGGGGAATGCTAGTAAATCATTTGGCAAAACGACATCCAGATGTTGCACCAGAGTCTGTACCAGAACTAAATTTACCAATTTTACGCCAAACAAGAGATTATTATTGTCAATATTGCGATAAGGTTTATAAGAGCAGCAGTAAACGTAAGGCGCATATCATGAAAAATCATCCAGGAGCTGCTTTGCCGCCAAGCAATCGACAGAAAGAATCGGATTACTCCGATTTACCAAATCCAACGTTTAGCCAAACTGTTGGTAGCATTACAACTACACCTCAGAGTTGTCAGTGGTGTCATAAACAATATGCTAGTAAAGCAAAACTTTTGCAACATCAACGAAAGAAGCATTCTAATTTAATGGAACCGGCTGATCAAGTACCGCGTTCGCGTAATCGACAGCCACAGAATCAGAATCAACCTCCGGTACTTATTGAAGATCACTTCGTATTGTCCGATTATATTCAGGCGTGTGAAACAAATTCAGATTTTTTTAAACCGAGAATAATCAAAATATCTGATGATGTTGATCTAATAAGCAATGGATTGGAGATAGTTGGACAACAATTTGTTCGTATGCGTGACATACGC
- Protein Sequence
- SVNWPTDHSLSTSMCEQQKKMNNNKLLFLTVEYVEDPSREYSRLFPTYEQVSFSPRASSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGSSPLISPTESTERANVNYVSQLTHPIDAQSVQQSDSSTDFVANENEEQLVATVGSELILMQESNSGLESATAPLMLTGIPSTDFTLSRDFLVMQDDQMNVINSFKAQNLDVDDPTHLSSVAGNSNKENNTDPLAASKEQEINEILMPTEEKKDDEKKNVRRSKRRINDKKNFCCDDCDDLCTGDNCTSHNVCTIADQPVPSRAIATLPGSYLSINKLSASEVLSGGSDYGVFAKRYIQKRTQFGPIEGILYPYDGTPFRNELPLLYETENKEFLKVDVSNENASNWMRFVRPALTYKDQNVVICQQRDGIVFLTTRSILPKEELKAGPSTDYAIRRNLIPLKSIQETKDDKEHKNQLSTWSRLDDNHSRRMKVFRGRNLKEKENSRQNNSKEWKCSVCGLIFRKPLLLNLHTLVHNSDKIKTKVQSTVCPQCGLQFQKQKELINHISQHGRLSLKKAKRLSSLSTYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRENKQVFECPMCRQLFSQSITLKDHIETHKNEDGTFSCPYCQRIFLKYSVIRKHIRAHHCERKHKCQICAKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATEEQMTQVTQTKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDYSDLPNPTFSQTVGSITTTPQSCQWCHKQYASKAKLLQHQRKKHSNLMEPADQVPRSRNRQPQNQNQPPVLIEDHFVLSDYIQACETNSDFFKPRIIKISDDVDLISNGLEIVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00232789;
- 90% Identity
- iTF_00983779;
- 80% Identity
- -