Basic Information

Insect: Euglossa dilemma
Gene Symbol: SMARCE1
Assembly: GCA_002201625.1
Location: NIJG01000033.1:3454750-3458015[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.3e-20 8.2e-18 64.4 2.8 1 68 76 143 76 144 0.98

2 4 7 4.4e+03 -2.1 0.2 44 63 275 294 268 299 0.75

3 4 3.6 2.2e+03 -1.1 0.1 15 44 288 318 280 320 0.77

4 4 6.8 4.3e+03 -2.0 0.2 20 35 367 382 366 384 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.3e-20	8.2e-18	64.4	2.8	1	68	76	143	76	144	0.98
2	4	7	4.4e+03	-2.1	0.2	44	63	275	294	268	299	0.75
3	4	3.6	2.2e+03	-1.1	0.1	15	44	288	318	280	320	0.77
4	4	6.8	4.3e+03	-2.0	0.2	20	35	367	382	366	384	0.82

Sequence Information

Coding Sequence: ATGGCTTTACCTCCAAATTATAAGCAAGTAGCAATAGCTACATCAAATATTGTTGCATCTAATCAACGACTTAGAGCATCTGGTGGAAGTAGTAGTAGTTCAACTAATAGTAAAGATGCACAAAGCCCATTTATTCAAACACCTCATAGTCATCCAGGATTTACACCACAAAAAGTTGGAAAGAATACAAATGCTGATTCTCGTATGCCAAAACCACCGAAACCACCAGAAAAACCTCTTATGCCTTATATGAGATACAGTAGGAAAGTTTGGGATCAAGTAAAAGCACAGAACCCAGAATTGAAGTTATGGGAAATAGGAAAAATTATTGGACAAATGTGGAGAGATTTACCAGAGGAGGACAAAACAGAATTCATTGAAGAATATGAAACAGAAAAGGTTGAATATGAGAAAAGTCTAAAAACTTATCACAATTCACCTGCATATTTAGCTTACATTGCAGCTAAAAATAGGGGAAAATCTGCATTATGCGCGGCTCAACAAAGTAACGATGATCGAGAGAGTCATGAACGTTCATCAGGCAGTACTAAAGGACAAGCAGCTCAAGATAGGAGAATAGACATTTTACCTGCTGAAGATGATGATGATCAAGATGATGGATATTCTGTAAAACACGTCGCATATTCCCGATATACTCGAAATCATCGACTTATTAATGAAATCTTTAGTGATACCGTAGTTCCTGATGTTCGTTCCGTTGTTACTACACAACGAATGCAAGTATTACGCCGCCAAGTACAATCTTTAACAATGCATCAGAAAAAACTAGAAGCAGAATTGCAACAAATAGAAGAAAAATTTGAAGCTAAAAAACGTAAATTTATTGAAACAAGTGAAATATTTCAAGAAGAATTAAAGAAACACTGTAAACCAGCTGTAGATGAAGAAGCGTTAAATAAAATGGTAGAACGACAATATGAAGCACTTAGACGAGACAGATTGAAAGGTGCAGAAGAAAATCGTTCGGATGGACCTGCATCTAGTGAATCCACTCCAAATTCTACTCCTACTCCAACTCCTGCTCCTATTAATGATGAAACTCCATCTGATGTTCCTGATAATGATGCAATGGATAAGAAGGCAAATGGATCTGATAAATCTAATAATGAAATTAAGAAAGAAACATCTTCACCATCATATACCGAAAATAAATCAGAACCTCCATCAACTCAAGGAAGTTCTAATCAACATACATCCAGTTCTGGAATATATTGTGGAACTATTAGTCCAATACAACAACAACAACAACAACAACAAACGCCAACGTTACCACCACCACCACCACCACCATCGCAACAGCAACAGCAATCGCCATCACAGCCACAATCGCAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAACCACCACCAACTCAACAGTCACAACCATCTTTACAACCACAGCAACCTACTACTACAACAGCAGTTGCTGTAACTGCTAATACAAGTACACCTGCAAGTGCAAATGCAACTACGCCGACTATGCCTCCCGTTTCTTCACCGGCACCTCCTATACAACATAATCCTCATCAACAAGGAATGTTAACTAATCATTCAATACCATCTCATCAAGGAACACAAGGAACTCAGGGAACACAGGTGCTCCCACCTCAAGGACAAGTTTCTAATCCACATACTTCTCAGATGATTTCACCGAATCAAGGCTACAATCAGCAATATCAACCAGGACCTACTCAACAGGCTCAAAATGTTCCATTAGCTCCAAGACCTCCACATCCATCTTATGCTTACTCTCAGCAACAACCATATCATCAACCATATCCTCAATATGCACATCCATATTATCATCAACCATATTCACAATATTCACCACATACAATGGGTCGCCCTCATAGTCATGGTCCTCATAGTCCACACAGTCCTCATTATCATCCACAATCTCCTCATGCTGTTGGAGAGAATACTACTAATAACAGCGTACCTAGTTCAAACACTGCTTCTACACCAACTTCTGATGCTAGTAATTCATCTTATTCTCCAGCATCAGGACATTGTGAAAATGAACGTTCTGTTTCTTCAGAGAATCAAGAAGGTCAACCAGATATTAAATCAGGATCTGGT
Protein Sequence: MALPPNYKQVAIATSNIVASNQRLRASGGSSSSSTNSKDAQSPFIQTPHSHPGFTPQKVGKNTNADSRMPKPPKPPEKPLMPYMRYSRKVWDQVKAQNPELKLWEIGKIIGQMWRDLPEEDKTEFIEEYETEKVEYEKSLKTYHNSPAYLAYIAAKNRGKSALCAAQQSNDDRESHERSSGSTKGQAAQDRRIDILPAEDDDDQDDGYSVKHVAYSRYTRNHRLINEIFSDTVVPDVRSVVTTQRMQVLRRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFIETSEIFQEELKKHCKPAVDEEALNKMVERQYEALRRDRLKGAEENRSDGPASSESTPNSTPTPTPAPINDETPSDVPDNDAMDKKANGSDKSNNEIKKETSSPSYTENKSEPPSTQGSSNQHTSSSGIYCGTISPIQQQQQQQQTPTLPPPPPPPSQQQQQSPSQPQSQQQQQQQQQQQQQQQQQQQQQPPPTQQSQPSLQPQQPTTTTAVAVTANTSTPASANATTPTMPPVSSPAPPIQHNPHQQGMLTNHSIPSHQGTQGTQGTQVLPPQGQVSNPHTSQMISPNQGYNQQYQPGPTQQAQNVPLAPRPPHPSYAYSQQQPYHQPYPQYAHPYYHQPYSQYSPHTMGRPHSHGPHSPHSPHYHPQSPHAVGENTTNNSVPSSNTASTPTSDASNSSYSPASGHCENERSVSSENQEGQPDIKSGSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214367;
90% Identity: -
80% Identity: -