Edil001788.1
Basic Information
- Insect
- Euglossa dilemma
- Gene Symbol
- Rfx2
- Assembly
- GCA_002201625.1
- Location
- NIJG01000128.1:172414-183532[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-37 9e-34 115.7 0.1 2 78 193 269 192 270 0.97
Sequence Information
- Coding Sequence
- ATGCTGCTGAAAAACATGCACCTCTGTTCTACTCTGACTACACTAGGCACCAGTGACTCACCATCCTACGCGTCCCTCACAACGGCAGTAGTGTCTGGTGAACCAGAGGCAGTGGGGTCCGAGTCAGTTTCTCATCCTACTTATGTTCAATATGTTGAGGGGGATGGTTCCACATATATACCGACAAATGGCCAGATGACATATCCTGTATATGCTGTTGGAGAAGCAGGAGCTATGTATACTCCTGCTTCCAGCCAATATTACACACCAGCAACTACTCCAGTAACATATGCTCAGGTTACTGGTCAAGGTTCAAATTCTACAACTGGACAATTATTATCTCAGGGCAGTGGCACATATCTTATTCAACAAAGTGTCGTAGATGGAGATCCCACAGCACATGCGTTAATATCTGCAGCCGCTGCACGTGCTAGTCCTCAGACAGAAAATGCGGAAACTGTGGTTAGCGGGGGTGGAGGGGCATACTTGATCAGCGGTAATTCAGGAGGTACTGCTGTCACCGTGGAAGATGCTGCAGCTGCAGCTGCAAACATGACGCATGCCACTAGAGTTTCTCAAGCGACAGTTCATTGGTTACTCGAAAATTACGAAACAGCAGATGGTGTCTCTCTTCCAAGATCCACTCTTTACAATCATTATCTACGTCACTGTTCTGAAAATAAGTTAGATCCTGTAAATGCTGCAAGTTTTGGAAAATTGATACGATCAGTTTTTTTGGGTTTAAGAACTAGGCGATTAGGCACAAGAGGAAATTCGAAGTATCATTATTATGGAATCCGCGTTAAACCCAGTTCTCCTTTGGTTATGCTAAATGAAGATGGAACACCTCGTCAACAACAAAGTACAAATTCACAAACAAAACGATTCAAATTCGTAAATCAAAAACAGGATACTACATATGAGAATAATGCACATTCGAATACAAATATTTCTTCAAATAATTCACCACCACAGTATCATCAGTACCTTGGTGAGGCAAGTGGTGCCATTCCAGAATTTCCAGAAATAATAGTTGGACACGGTTCATCCCTTCCAGAAGATTGCACGTTAGAAGACATTGATACGTTCCGTAGTATATACAGAGAACATTGTGAAGCCTTTTTAGATGCTGTTCTCAATTTTGAGTTTGCTACCGTAGAAAGCCTTTGGAGAGAATTCTGGCGTAGTCAAGACAATAATAACGGCGATGAATGTGAAGAGGAAAAATATTTATCAAAAACTAAGCTATATCAGATGTGTAAATGTTCAGAAGTTCAAGATTTCATAAGGAAGGTTGACTACACATTTTATCAAAATTTAGTAGAAGTATTAATGCCTAATGTATTGCGACCTATACCAAGTTCGTTAACACAATCTATACGAAATTTTGCGAAAGGATTAGAATCGTGGTTAACATCAGCAATGGCTGACTGCCCTGAGGAAATGACACAAATAAAGTTAACTGCTGTATCTGCGTTTGCTCAGACACTAAGGCGTTACACATCGTTAAATCACCTTGCTCAAGCTGCACGTGCAGTGCTTCAGAATTCTAGTCAAATAAATCAAATGCTAGCTGATCTGAATCGTGTAGATTTTCATAATGTGCAAGAACAGGCCTCATGGGTATGCCAATGCGATTACGCTATGGTACAACGTCTAGAAGCAGATTTTAAAGTGACATTACAACAACAAAATTCATTAGAAGACTGGGCAATTTGGTTAAAGAGCGTTGTAACGCAAGTTCTTAAACCATTCGAAGAGAAACCAACGTTTGCAAAAGCTGCTCGACAATTTTTGCTCAAATGGTCTTTTTACAGTTCCATGGTTATTCGTGACCTTACTTTAAGAAGTGCAGCTAGTTTCGGATCTTTTCATCTAATTCGGTTATTGTACGATGAGTATATGTTTTATTTGATCGAGCATCAAGTAGCAGTTGCTACAGGAACAACTCCGATTGCAGTAATGGGAGATAAAAGTCAAAATTGCTCTTTAGTTAGTGCGTTTGGCGCTACTTCTAATGGAGATACATTAAACACAAGTCAACCAAAGCGTATGAAATTGAGCTAA
- Protein Sequence
- MLLKNMHLCSTLTTLGTSDSPSYASLTTAVVSGEPEAVGSESVSHPTYVQYVEGDGSTYIPTNGQMTYPVYAVGEAGAMYTPASSQYYTPATTPVTYAQVTGQGSNSTTGQLLSQGSGTYLIQQSVVDGDPTAHALISAAAARASPQTENAETVVSGGGGAYLISGNSGGTAVTVEDAAAAAANMTHATRVSQATVHWLLENYETADGVSLPRSTLYNHYLRHCSENKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPSSPLVMLNEDGTPRQQQSTNSQTKRFKFVNQKQDTTYENNAHSNTNISSNNSPPQYHQYLGEASGAIPEFPEIIVGHGSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMADCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQASWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTQVLKPFEEKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMGDKSQNCSLVSAFGATSNGDTLNTSQPKRMKLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394019; iTF_01389928; iTF_01389162; iTF_01391690; iTF_01393231; iTF_01392502; iTF_00200490; iTF_01266639; iTF_00756370; iTF_00625248; iTF_01539346; iTF_00024385; iTF_00938401; iTF_00961569; iTF_00964225; iTF_00223618; iTF_00769378; iTF_01066690; iTF_00860867; iTF_01065987; iTF_00218853; iTF_01199877; iTF_01303045; iTF_01413893; iTF_01420037; iTF_01412838; iTF_01420678; iTF_00140328; iTF_00962248; iTF_00214153; iTF_00221001; iTF_00222281; iTF_01453833; iTF_01070090; iTF_00059916; iTF_00088524; iTF_00227020; iTF_00229100; iTF_00232364; iTF_00719116; iTF_00762988; iTF_00865068; iTF_01412044; iTF_01537580; iTF_00982029; iTF_01255277; iTF_01411214; iTF_00452335; iTF_01068719; iTF_00084272; iTF_00218160; iTF_00221680; iTF_00232976; iTF_00983376; iTF_01065296; iTF_01069392; iTF_00214769; iTF_00866449; iTF_01497937; iTF_00231058; iTF_00982706; iTF_00085907; iTF_00227699; iTF_00228403; iTF_00117748; iTF_00962932; iTF_00863701; iTF_00222934; iTF_00939254; iTF_01086966; iTF_00087671; iTF_00217495; iTF_00224983; iTF_00225655; iTF_00230455; iTF_00718263; iTF_00762295; iTF_01048631; iTF_01168919; iTF_00633368; iTF_00675768; iTF_00865752; iTF_00215449; iTF_00220217; iTF_01067353; iTF_00391034; iTF_00393338; iTF_00086843; iTF_00861628; iTF_01068028; iTF_00231741; iTF_00963614; iTF_01419391; iTF_01122176;
- 90% Identity
- iTF_01418748;
- 80% Identity
- -