Emex007717.1
Basic Information
- Insect
- Eufriesea mexicana
- Gene Symbol
- bab2
- Assembly
- GCA_001483705.1
- Location
- NW:259532-286265[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-13 7.5e-10 37.5 0.0 1 39 414 453 414 457 0.90 2 4 2.1e-12 2.3e-09 36.0 0.1 2 39 469 506 468 509 0.94 3 4 1.2e-18 1.3e-15 56.0 0.0 4 45 526 568 523 568 0.96 4 4 6.8e-12 7.5e-09 34.3 0.0 15 42 589 617 585 618 0.95
Sequence Information
- Coding Sequence
- ATGGAGACGGATCGTTATTGGGGCGTACACTACAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAATAACTACCAATCGAACATGACGTCCGTTTTCCACCAACTCCTTCAGACCGAAGCTTTCGTGGACGTCACGCTGGCATGCAACGAAGCTTCCTTAAAAGCGCACAAGGTGGTATTATCGGCGTGCAGTTCCTACTTTCAAAAGCTCCTACTTTCGAATCCCTGCAAACATCCGACGATCATTATGCCCCAAGACGTATGTTTCAATGATCTCAAGTTCATCATAGAATTCGTCTACAGAGGAGAGATCGATGTTTCGCAAGCAGAACTTCAGTCACTGTTGAAAACAGCTGATCAACTAAAGATCAAAGGATTGTGCGAGGTGCCGGAAAGCAGAGACGGTCCACCTTCTGTAAGTCTGAGTTCACCGCCAAGAGAACCCGGTACCCCTAGGATAAATTTCACCAAGTTGAAAAGACATCATCCGAGATACAAGAGAGCCAGGACAACGTTCGAACCTCGCGCTACGGATTCAAGGCATTACGATCGATACAAAGAGGAGGAATCGAACGAAAATTACAATCGTGAGAACAAAGAGAACCACAGAGACTGGCAAGCTGAAGATGAAGATTGCACGGAGACCGCCGCGGGAGCAGTAGTCTTGGAAACTTGCCAGCGTAACAGTAACAATAGTACCATCACCACtggcaacaacaacaataataacaacaataataataacactaGCAGTAACGGCACCGGTAACACCACGAGCAACAACAATAACAACGgtgACATGTTTTGTCATACAGGCCTTGGTCATTACGGTCATCATCCGGATCCCGGTGAGGTTGACCTACCACCAGAGACTCAACCGACACCGCCGAGTGCCACATTGGTCGGTACTACCATTACCCATCTACGAGACCCGGATCATCATGCCACAGGTGCAATCGCTGAGATCCAAAATTGCGACAGTGTAAAGATTAAGTTTGAAACGTTACACACGATGGATTCGTCGGACACGATCGATATCGATAGCCACATGTCGGATCGAGCGAGCGTCAGTTCGAAGAACGCGACCGATAGCGACAACATGATGATGATTACGCCGGAATTACTTGGATTAATGCCGTCTGGCAGTTCGGTACATTCGGATTCCGGTGAAAACAATTCGAGAGGTCACTCGGGACAATCCAGTTCTCATCATCATGGCTCGAAATCTTGGACTCAAGAGGACATGGATGCCGCTTTGGAAGCATTACGAAATCATGATATGAGCCTTACAAAAGCCTCCGCCACCTTCGGTATACCTTCCACGACCTTGTGGCAAAGAGCGCATCGGCTTGGTATCGACACTCCGAAAAAGGACGGACCCACCAAATCCTGGAGCGACGAGAGTTTAAATAACGCGCTCGAGGCATTACGGACTGGAACAATATCAGCGAACAAAGCTTCGAAAGCATTTGGTATACCCTCGAGCACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGATTAGCTGCGCCTTTTAATGCGAGTCCTACCACGTGGTCGCCGGTCGATCTCGACCGCGCTCTCGAAGCGATACGATCCGGCCAAACGTCCGTACAAAGAGCCTCCACGGAGTACGGTATACCAACGGGGACATTGTATGGTCGATGTAAAAGAGAGGGTATCGAACTTAGCAGAAGTAATCCTACGCCTTGGAGCGAAGACGCTCCCTTCCCTTCCCTGCAATTTTTCAGATTAGGGCACATGAGCATCAATCAAGCGGCTATCCACTATAACTTACCGTACTCTTCTTTGTACGGTCGTTTTAAGAGAGGAAAATACGAAGAACCAGCGGTCGGTGAAATATCGCAAGATGGTAGCAATCCTCATTTTCATCAAAGCCCAAGTCAGAATCATTCGTCCGCCGTACCGGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNENYNRENKENHRDWQAEDEDCTETAAGAVVLETCQRNSNNSTITTGNNNNNNNNNNNTSSNGTGNTTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHATGAIAEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNATDSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPVDLDRALEAIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAPFPSLQFFRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSNPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00230773;
- 80% Identity
- iTF_00684250;