Emer037207.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720050.1:5850867-5869334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.6 8.7e+02 1.9 0.3 1 22 246 267 246 269 0.82 2 12 0.037 4.3 9.2 1.7 1 23 277 299 277 299 0.97 3 12 0.17 20 7.1 0.3 1 23 303 325 303 325 0.87 4 12 0.0072 0.83 11.4 2.7 1 23 332 355 332 355 0.94 5 12 0.0039 0.45 12.3 0.9 2 21 360 379 359 380 0.92 6 12 0.00013 0.015 16.9 0.2 2 23 396 417 395 417 0.94 7 12 0.00014 0.016 16.8 0.3 1 23 422 444 422 444 0.98 8 12 8.2e-05 0.0094 17.5 5.0 1 21 453 473 453 478 0.94 9 12 0.00049 0.056 15.1 1.7 1 23 486 509 486 509 0.92 10 12 0.0022 0.26 13.0 0.3 1 23 515 538 515 538 0.96 11 12 0.018 2 10.2 0.6 3 19 552 568 550 573 0.89 12 12 0.075 8.6 8.2 0.9 1 23 582 605 582 605 0.96
Sequence Information
- Coding Sequence
- ATGAGAGAGATCGATATAAATATAGAAGGTTACAATGTGAACGGAATATGTGTAGGGTGTTTAAACTACAACCGTAGGATGTTCTATCAGGAAGATGTAAAAGAATGTTTCAAGTTATTGGCCGATATTGAAGTTCCCGACGGTCTCTCAGTGCAAGTATGCTGGGAATGCCTTGCGTCTGTAAgaagaataaaacaatttcaatcACAAATTCTCAATGCTTATGAGATTCTCATTGATTACTCTAGACAGCACACATTTCTCAACTGCCCATCAGATTTAACAAAGCATTCCACAACCCGGTTGAGTATACCTGAGCAATGGTTCACAACGGAAGTGCTGAGAGATGAACAAATAGAAATGGATTTTGTGGAAAAACAAGAAGTTAAAGAGGAGGAGAATATTAAAGCTGATCTTGAACCAATAAAGACTGAGGAGCAGTTCGACGATCTCACTGAAGCGCCTTTCGAAGATTTCGCACCAGAACCTGAGTTGTCATCGGAAGACGATGTGCAGCTGTCCACGCTCAaacagaagaaagacaaagtgaGAAAGGTCAAGAAGAAGAGAAAGAGTAATGGGGAAAAGAACAAAATCATAGTACGCTACACAGATCCACTGAAGAAGTTGAAAAACTTACCGGCGGATCTGGTGGATGTTTACACGATGAGCGACGAGGAAATGTGGACCGTAAGACTGCAGGACCAGGACAGCAAGTTCTTTGCCCGATTGAGGTTTAAGTGTTTGTCGTGTCTGATGTCTTTCAATACGGAGCGATTGTCGGCGGAACATATGGCTGGGAAGCATAGACCGAAAGGAGAAGACTGCTACCAATGTGATATATGTGAATCCTACTTCTTAACTAAAGATCATCTGTCAGCCCATCGCTCCTTACACCTCACGGCTTACAAATGCAAAGAGTGCGGCCTTAAAACCTCGGTGAGGGCAATCATCAGTAAACATGTGAAGGTGCATAGGGAAAATATCGAGGTGTTCACATGTGAACTGTGTCAGAAGTGGTTCAGCACGCGATCCAAACTCACTTACCATAGAGGGAAGTACCATAAGGAGAAGCTACAATGCGACTGTTGCGGCAAAGTGTTTGCCAGCAAGATGACTCTGAAGTACCATCTCAAagttttaacacaaaataaagatgaCAAGCCGAAGGAGAAGCTTTACATACCGTGTAAAGGATGCGATAAGGTGTTTCAATCCAAGAAGAGTTATAGGGCCCATGTGGTCATACACAACGGCATCAAGTATCCGTGCCCGATATGCGGCAAACTTTTCCAATGGAAACGTAACCTCGCTCGACACACAAGGAACCATAGAGAGAAAGACGCCGGGGCCTTACACGAGTGTAGGGAGTGCGGGAAGACATTCTCTAGCCGTGATTGTTATAATAACCACATGAGACTCAGCAAAAGGCATGTGCCTGAGGACGCTTACGCgcACGAATGTAATTATTGTGGCAAGAAGTTTGCATCGAAATGGTGTATGGTGGACCACATCGATTGGGACCATCTGAAGGTTATCAAGTACCAGTGCAGCGTCTGTTTCAAGGCTTTTAAAACTGCGAAGATAATGGTGGCGCATATGAACAACGTGCACGAAGGCAAGAAGAATAAGGAGCCGGAGGGAGAACATCTGTGCGAGATCTGCGGGAAGTCCTACAAGacAGTAAAACGTCTCAAGGGCCACGTGTGGTCGATGCACACGAACCGCTCCGCCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCGCCTGGCAGACCTCCATCTACAAGCACCGCAAAATGATGCACGACCACACCCGAAAGCAACCTCGTGCTCTCCAAACGGGTAAAAAACAAGACCCTTACCCGGAAATCGAACCTGCGAACCGTATGCAATACTTTCAACCTAGCAACGTGGTACAAAACATTGTATTGGTTGCGCAGCGACCGGCGTTGTAG
- Protein Sequence
- MREIDINIEGYNVNGICVGCLNYNRRMFYQEDVKECFKLLADIEVPDGLSVQVCWECLASVRRIKQFQSQILNAYEILIDYSRQHTFLNCPSDLTKHSTTRLSIPEQWFTTEVLRDEQIEMDFVEKQEVKEEENIKADLEPIKTEEQFDDLTEAPFEDFAPEPELSSEDDVQLSTLKQKKDKVRKVKKKRKSNGEKNKIIVRYTDPLKKLKNLPADLVDVYTMSDEEMWTVRLQDQDSKFFARLRFKCLSCLMSFNTERLSAEHMAGKHRPKGEDCYQCDICESYFLTKDHLSAHRSLHLTAYKCKECGLKTSVRAIISKHVKVHRENIEVFTCELCQKWFSTRSKLTYHRGKYHKEKLQCDCCGKVFASKMTLKYHLKVLTQNKDDKPKEKLYIPCKGCDKVFQSKKSYRAHVVIHNGIKYPCPICGKLFQWKRNLARHTRNHREKDAGALHECRECGKTFSSRDCYNNHMRLSKRHVPEDAYAHECNYCGKKFASKWCMVDHIDWDHLKVIKYQCSVCFKAFKTAKIMVAHMNNVHEGKKNKEPEGEHLCEICGKSYKTVKRLKGHVWSMHTNRSASKSFKCKLCPATFAWQTSIYKHRKMMHDHTRKQPRALQTGKKQDPYPEIEPANRMQYFQPSNVVQNIVLVAQRPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00681864;
- 90% Identity
- iTF_00681864;
- 80% Identity
- -