Elac004032.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387333.1:11977141-12000015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5 5.8e+02 2.1 0.3 1 22 166 187 166 189 0.82 2 12 0.022 2.9 9.4 1.7 1 23 197 219 197 219 0.97 3 12 0.21 27 6.3 0.4 1 23 223 245 223 245 0.86 4 12 0.00028 0.037 15.3 4.7 1 23 252 274 252 275 0.95 5 12 0.0023 0.3 12.5 0.9 2 21 280 299 279 300 0.92 6 12 2.9e-05 0.0038 18.4 0.2 2 23 316 337 315 337 0.94 7 12 8.1e-05 0.011 17.0 0.3 1 23 342 364 342 364 0.98 8 12 4.9e-05 0.0063 17.8 5.0 1 21 373 393 373 398 0.94 9 12 0.00029 0.037 15.3 1.7 1 23 406 429 406 429 0.92 10 12 0.0017 0.22 12.9 0.3 1 23 435 458 435 458 0.96 11 12 0.01 1.4 10.4 0.6 3 19 472 488 470 493 0.89 12 12 0.044 5.7 8.4 0.9 1 23 502 525 502 525 0.96
Sequence Information
- Coding Sequence
- ATGTCGCATACATTTCTCAACTCCCCATCTGATTTGACGAAGCATTCCACCACTCGGCTGAGTATACCCGAGCAATGGTTCACAACGGAAGTGCTGAGAGATGAACGTATAGAAGTGGATGTTGTGGAAAAACAGGAAGTTAAAGAGGAGACGGATATCAAAGCTGATCTTGAAGTAGAACCAATTAAGGCTGAAGAGCAGTTCGACGATCTCACTGAAGCGCCCTTCGAAGATTTCGCACCAGAACCTGACTTGTCATCGGAAGACGATGTACAGCTGTCCACGCTCAAACAGAAAAAAGACAGAGTGAGAAAGGTCAAGAAGAAGAGAAAGAGTAACGGGGAAAAGAAAAAAATCATAGCGCGCTACAAAGATCCACAGAAGAAGTTGAAAAACTTACCGGCGGATCTGGTGGAAGTCTACACGATGAGTGACGAGGAAATGTGGATCGTAAGACTACAGGACCAGGACAGCAAGTTCTTTGCCCGATTGAGGTTCAAATGCTTGTCGTGTTTAATGTCTTTCAATACGGAGCGATTGTCGGCGGAACACATGGCTGGGAAGCATAGACCGAAAGGAGAAGACTGCTACCAATGTGATATATGTGAATCCTACTTCTTAACTAAAGACCACCTATCTGCCCATCGTTCCTTACACCTCACGGCTTACAAATGCAAAGAGTGCGACCTTAAAACCTCGGTGAGGGCCATCATCAGTAAACATGTGAAGGTACATAGGGCAGATATCGAGGTGTTCACCTGTGAACTGTGTGAGAAGAGGTTCAGCACGCGATCCAAACTCTCTTACCATAGAGGAAAGCACCATAAAGAGAAGCTACAGTGCGACTGCTGCGGCAAAGTGTTTGCCAGCAAGATGACTTTGAAGTACCATCTCAAAGTTTTAACACAAAACAAAAATGACAAGCCGATGGAGAAGCTTTACATACCGTGTAAAGGATGCAATAAGGTGTTCAATTCCAAGAAGAGTTACAGGGCTCATGTGGTCATACACAACGGCATCAAGTATCCGTGCCCGATCTGCGGCAAACTGTTTCAATGGAAACGTAACCTCGCTCGACACACAAGGAACCATAGGGAGAGAGACGCCGGGGCCTTACACGAGTGTAGAGAGTGCGGGAAGACATTCTCTAGCCGTGATTGTTATAATAACCACATGAGACTCAGCAAAAGGCATGTGCCTGAGGACGCTTATGCGCACGAATGTAATTACTGTGGCAAAAAGTTTGCATCAAAATGGTGTATGGTGGACCACATCGATTGGGACCATCTGAAGGTAATCAAGTACCAGTGCAGCGTCTGTTTCAAGCCCTTTAAAACTGCTAAAATAATGGTGGCGCATATGAACAACGTACACGAAAATAAGAACAATAAGGAGCCGGAGGGAGAACATCTATGCGAGATCTGCGGGAAGTCCTATAAGACGGTAAAGCGTCTTAAGGGCCACGTGTGGTCGATGCACACGAACCGCTCCGCCAGCAAGAGCTTCAAGTGCAAACTGTGCCCCGCCACCTTCGCCTGGCAGACCTCCATCTACAAGCACCGCAAGATGATGCACGACCATGCCCGAAAGCAACCACGAACTCTCCAAACGGGTAAAAAACAAGATCCTTATCCGGATATCGAACCTGCGAACCGCATGCAATACTTTCAACCTAGCAATGTGGTACAAAACATTGTGTTGGTGCCTCAGCGGCCGGCGTTGTAG
- Protein Sequence
- MSHTFLNSPSDLTKHSTTRLSIPEQWFTTEVLRDERIEVDVVEKQEVKEETDIKADLEVEPIKAEEQFDDLTEAPFEDFAPEPDLSSEDDVQLSTLKQKKDRVRKVKKKRKSNGEKKKIIARYKDPQKKLKNLPADLVEVYTMSDEEMWIVRLQDQDSKFFARLRFKCLSCLMSFNTERLSAEHMAGKHRPKGEDCYQCDICESYFLTKDHLSAHRSLHLTAYKCKECDLKTSVRAIISKHVKVHRADIEVFTCELCEKRFSTRSKLSYHRGKHHKEKLQCDCCGKVFASKMTLKYHLKVLTQNKNDKPMEKLYIPCKGCNKVFNSKKSYRAHVVIHNGIKYPCPICGKLFQWKRNLARHTRNHRERDAGALHECRECGKTFSSRDCYNNHMRLSKRHVPEDAYAHECNYCGKKFASKWCMVDHIDWDHLKVIKYQCSVCFKPFKTAKIMVAHMNNVHENKNNKEPEGEHLCEICGKSYKTVKRLKGHVWSMHTNRSASKSFKCKLCPATFAWQTSIYKHRKMMHDHARKQPRTLQTGKKQDPYPDIEPANRMQYFQPSNVVQNIVLVPQRPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683661; iTF_00682779;
- 90% Identity
- iTF_00683661; iTF_00682779;
- 80% Identity
- -