Epro041123.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000848.1:37202-38821[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.002 88 4.6 0.1 26 48 84 106 81 112 0.90 2 10 0.036 1.6e+03 0.6 0.1 25 48 113 136 105 139 0.81 3 10 0.091 4e+03 -0.7 0.0 21 46 138 163 133 168 0.82 4 10 0.00069 30 6.1 0.3 21 50 168 197 163 200 0.88 5 10 0.13 5.9e+03 -1.3 0.0 25 48 202 225 197 226 0.82 6 10 1.1e-05 0.47 11.9 0.0 20 44 256 280 250 286 0.89 7 10 0.00019 8.3 7.9 0.2 16 52 320 356 318 356 0.86 8 10 3.2e-07 0.014 16.7 0.4 21 48 353 380 351 386 0.92 9 10 0.0053 2.3e+02 3.2 0.3 24 48 386 410 381 414 0.86 10 10 0.75 3.3e+04 -3.6 0.1 27 48 446 467 445 470 0.80
Sequence Information
- Coding Sequence
- ATGGAGCAAGAAATCGAGCAGATCTTCATAAAGCCCGACATCGCGCACTTGAAGGTAGAAGTGAACTGTGAACAGGAAAGGGGGGACCCTTACCAGTCGCCTGAGGCAGCATTTGACATCAAAAGAGAACACATCTCCGAACATATCGAGCCGTATGAAGATTCAGTAGCAGACGATTGTGACACTGCAAAAGCTAAGGATATTGAGATTGTTGGTAAAGTATATGAAAATGGTAAGATAAACAGGCTTCAATGTCCTCAGTGCGAGAACAATTTCAAGAACAGAGCAAATTTAAAGCAACATCTCAAGTTTGTCCATTCTTCCGAAGATGATATTGTAGAGTGCGATAAGTGTTACAGGACGTTCAAGTCTGTGGGTCATCTCCGGTCACATATCCACTCCGTCCATGCTGAAGAGAAAGAAGTTACCTGTGAGCACTGCGGTAAAGTATTTTTAAACAAGAAACGCCTGAACAACCATATATTCTATTCGCACCCGGAACCAGAGGAAAGTGTGAACTGTACTATATGCTCCAAATCATTTAAACGGAGATACAATTTGAAGATCCATATGAGACTCGTCCATCCAGCGGAAGACAGATCCGTGCAGTGTCCGCATTGTGATAAAAAATTCAAAGTCGACATGTTGCTCCAGCGGCATATAAAATGGAGTCATCCACAAGATGGCATGATGTATCGATGCCCTGATTGTGGCCGGACGCTGCCATCTCTCGCTTGCTTCAAGAAACACATGCAAAACGTCCACTCTTCGTCCCAGGATGCCAAGTGTAACATCTGTGATAAAGTTTTCAAGACCATCAAGACTTTAAGAAGGCATGAGAAGAATATTCATGGTGGTGAGAAAGTGGAGGTAAGACAGTACAAAGTAGGTGACCTGCCCTGTACACAATGCGACAAAAAATTCACAACCAACACAGCGCTGTTTTGGCACTTCGAGCGACACCATTCTGAAAATAAGCGGAGTAACGCCTGTCATATATGTAGCAAAGAGTTGTCAGACCAGGGCAGTTTGAAAAGGCACTTAGACATGGTGCATTCAGTTGAGCCAGCCAGCTGTCCTATATGTTCAAAGACTTTTAAGAGTCCTATGAATCTGCAGAGGCATATAAGAGTGACCCACGCCCCGCCTGAAGCTGCACAAAATTGTGATATTTGCAAGAAAACTTTTAAATGCTCCATGCATCTAcgaatacatataaacacagtCCACTCTACTGAAGGTATCTTTAATTGCGATATCTGTAATAAAGAGTTTTCTTCTAAAAAATACATGTTGAAGCATAAAAAAACCCATGTTGATGTCAAAATGTTCCCTTGTGGAGTTTGTAACAAGTTATTTAAATGCGTGAATGATGTTAAAAAGCACGTGAAACGGGTGCACATGAAGGCTAAAATTAAAGTCGAAAACGAAGCCCCAATTGACACagaagattctagaagtacagAGTCCACGGATAACAAGGACACGGATAGGGAATCTTTGAACTGCTTGAAGTGTGGCAGCGAATTTGAGAACTCTGCAGATTTGCACTCGCATATATTGAATTGTAGTGATATTCCGTTGACATCTTTTGTTAAAGTTGAATTACAAGATATGTAG
- Protein Sequence
- MEQEIEQIFIKPDIAHLKVEVNCEQERGDPYQSPEAAFDIKREHISEHIEPYEDSVADDCDTAKAKDIEIVGKVYENGKINRLQCPQCENNFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSVGHLRSHIHSVHAEEKEVTCEHCGKVFLNKKRLNNHIFYSHPEPEESVNCTICSKSFKRRYNLKIHMRLVHPAEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPDCGRTLPSLACFKKHMQNVHSSSQDAKCNICDKVFKTIKTLRRHEKNIHGGEKVEVRQYKVGDLPCTQCDKKFTTNTALFWHFERHHSENKRSNACHICSKELSDQGSLKRHLDMVHSVEPASCPICSKTFKSPMNLQRHIRVTHAPPEAAQNCDICKKTFKCSMHLRIHINTVHSTEGIFNCDICNKEFSSKKYMLKHKKTHVDVKMFPCGVCNKLFKCVNDVKKHVKRVHMKAKIKVENEAPIDTEDSRSTESTDNKDTDRESLNCLKCGSEFENSADLHSHILNCSDIPLTSFVKVELQDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00680829;
- 80% Identity
- iTF_00680829;