Epro021558.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eudemis profundana
Gene Symbol
-
Assembly
GCA_947034915.1
Location
CAMQQJ010000198.1:333401-334729[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 8.4e-05 0.0068 18.0 1.8 1 23 166 188 166 188 0.97
2 8 0.00013 0.01 17.5 4.5 1 23 194 216 194 216 0.94
3 8 0.00027 0.022 16.4 2.9 1 23 222 245 222 245 0.97
4 8 2e-05 0.0016 20.0 0.8 1 23 252 274 252 274 0.98
5 8 1.6e-06 0.00013 23.4 1.2 1 23 280 302 280 302 0.97
6 8 0.00066 0.053 15.2 2.5 3 23 313 336 311 336 0.89
7 8 2.4e-05 0.0019 19.8 0.5 1 23 342 364 342 364 0.97
8 8 9.9e-06 0.0008 21.0 0.4 3 23 371 391 369 391 0.96

Sequence Information

Coding Sequence
ATGGAGTTCACAAGCTTGATATTACCTCTTACGAAAAATATTTGTCGTACATGCCTCGCCGAATCGGAGACTGAAATGCTTTTAAATGTACAGGATTTGATCGAACATGAGATgactaaaatcaaacttatagatattttagtttttttgaaCTGTTTGGAGAATAATGACGAGGAGAACTGGCCTAGTGGAATGTGTGCATCATGTGTATCAACTGCATTAGTATCCTACAATTTCAAATTGAACTGCCTACAGGCTAATTCGACATTGTCTCAAATATTTATGCAAACTTCACCTAACTTACAGCGGTCAGATATAGATTCAATTGACATCAATGTCGTGTATCAAGACCAtgagtatgaaattccattgtTTAGCAGCCAGCCATCCTTAGATTTTGATCATCTGCCGGCCAACAAAGAAGTAACACCACTGCCTCCAGTCACCGAGATAACATCTGCTAAACAGCCACCGAGAAAAGAAGGGGAGAAAAGATATGCTTGTACTTTTTGCTCCAAATCATTCACCAGAATCTATGGTTTAAAGTACCATATGGTTAAACACAGTAATATACGTAGATATCTGTGCCCAAAATGCGGGAAATGCTTCCATACTTCAAATGATTTGAGGCAGCACTCAATCTCACACCAAGAAACTGGTcaatttaaatgtgggttttgTCGTAAAACTTACAAGTCAAGACAGTCCCTGAAGGAGCATTTCCGTGTAGCTCATTCAAACAATCGCAAGCTGTTTGTCTGTGTTACTTGCGGGAAAAGCTTCACTGCAAAATCAACTCTAATGATGCACAATAGAAGTCATAATGGAGATAAGAAGTTTGCTTGTCCTCATTGCCCAAAGACCTACACACGAGCATCATATTTGAGAGTGCACAGTCTCACTCATACAGGACAAGAGAGACCTCGGCCATTCTTATGTGAAAATAAAGGCTGTGATAGAAGTTTTTCAACAAAGCATTCCTTACTAGTGCATATTGCCCATACACATACAACAGTGAGGGCCCACAAGTGCAACATTTGTTACAAAGGATTTGCTACTGCCTCAGGTTTGAAGGTCCACTGGGAATCTCACTCTAACAAGGAGATAAATTGTAATATTTGTGGCAAATCTCTGGCTAATAAGAGAGTGCTGCAAAAACACATGAAAGTGCATGATGTTGATGCCAACGATATGATTCTTGAGACAGTTGTAGATGATGTGTTCTTTGATCAAGTCTATTGA
Protein Sequence
MEFTSLILPLTKNICRTCLAESETEMLLNVQDLIEHEMTKIKLIDILVFLNCLENNDEENWPSGMCASCVSTALVSYNFKLNCLQANSTLSQIFMQTSPNLQRSDIDSIDINVVYQDHEYEIPLFSSQPSLDFDHLPANKEVTPLPPVTEITSAKQPPRKEGEKRYACTFCSKSFTRIYGLKYHMVKHSNIRRYLCPKCGKCFHTSNDLRQHSISHQETGQFKCGFCRKTYKSRQSLKEHFRVAHSNNRKLFVCVTCGKSFTAKSTLMMHNRSHNGDKKFACPHCPKTYTRASYLRVHSLTHTGQERPRPFLCENKGCDRSFSTKHSLLVHIAHTHTTVRAHKCNICYKGFATASGLKVHWESHSNKEINCNICGKSLANKRVLQKHMKVHDVDANDMILETVVDDVFFDQVY