Basic Information

Insect: Clepsis dumicolana
Gene Symbol: Prdm13
Assembly: GCA_963691665.1
Location: OY829525.1:5298489-5299820[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.2e-05 0.00083 20.4 1.8 1 23 170 192 170 192 0.97

2 8 9.2e-05 0.0064 17.6 1.5 1 23 198 220 198 220 0.94

3 8 0.00019 0.013 16.6 4.6 1 23 226 249 226 249 0.97

4 8 1e-06 7.2e-05 23.7 0.5 1 23 256 278 256 278 0.98

5 8 3.4e-06 0.00023 22.1 0.6 1 23 284 306 284 306 0.96

6 8 0.0011 0.075 14.2 0.9 3 23 317 340 315 340 0.88

7 8 0.00014 0.0099 17.0 1.3 1 23 346 368 346 368 0.97

8 8 4.2e-05 0.0029 18.7 0.2 3 23 375 395 373 395 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.2e-05	0.00083	20.4	1.8	1	23	170	192	170	192	0.97
2	8	9.2e-05	0.0064	17.6	1.5	1	23	198	220	198	220	0.94
3	8	0.00019	0.013	16.6	4.6	1	23	226	249	226	249	0.97
4	8	1e-06	7.2e-05	23.7	0.5	1	23	256	278	256	278	0.98
5	8	3.4e-06	0.00023	22.1	0.6	1	23	284	306	284	306	0.96
6	8	0.0011	0.075	14.2	0.9	3	23	317	340	315	340	0.88
7	8	0.00014	0.0099	17.0	1.3	1	23	346	368	346	368	0.97
8	8	4.2e-05	0.0029	18.7	0.2	3	23	375	395	373	395	0.96

Sequence Information

Coding Sequence: atgGAGTTCACGAGTTTAATACTCCctcttacaaaaaatatttgtcgAACATGCCTCGCAGAATCCGAGACAGAAATGCTTTTAAATGTGCAAGATTTAATCGAGCACgaaatgattaaaattaaacttatagATATTTTAGTATTTCTTAACTGCTTGGAGAATAATGACGAAGAGAACTGGCCTAGCGGGATGTGCGCCTCCTGTGTGTCTACTGCATTAGTATCCTACAACTTCAAACTGAATTGCTTGAAAGCAAATGCAACATTATCACAAATATTCATACAAACCTCGCCTTCCAACCACAGATCTGATATAGATTCAATTGACGTCAATGTGGTTTATCAGGACCATGAATATGATGTTCCTCTGTTTAGTAGCCAGCCAGCCTTAGATTTTGATACTAATATGACTAATCTGCCAGTAAATAAGGAAGTAACTCCGCTGCCTCCAGTCACTGAGATAACATCTGCTGAGCAGCCCCCTAGAAAAGAGGGCGAGAAAAGATATGCCTGCACACTATGTAACAAATCATTCACAAGAATTTATGGATTGCGGTATCACATGACTAAACACAGCAACTTCCGTAAATATCTGTGTCCCAGATGTGGCAAGTGTTTTTACAATGCTAATGGATTAAGGCAACACTCAATTTCCCATCAAGAAACTGGTCAATTTAAATGTGGATTTTGCCATAAGACTTACAAATCTCGGCAGTCCTTGAAGGAGCATTTTCGAGTGGCTCACTCCAACAACCGCAAGCTATTTGTGTGTGTAACCTGTGGGAAGAGCTTCACAGCAAAGTCAACTTTGATGATGCATATCAGGTCTCATAATGGAGAAAAGAAGTTTGTTTGTGATCATTGCCCTAAGGCATACACAAGAGCATCATATTTGAGAGCCCATAGTCTCATCCACACAGGACAGGAGAAACCTCGGCcattcttgtgtcaaaaaaaagGCTGTGATAGAAGCTTTGTAACAAAGAATTCTTTGCTGGTGCATATTGCTCATGCACATACATTAGAGAGACCCCACAAATGTAACATTTGCTACAAAGAGTTTGCTACTGTCTCGGGATTGAAAATTCACAGGGACTCTCACTctaataaagcaattgattGTAACATTTGTGGCAAATCTCTCGCTAACAAAAGAGTTCTGCAGAAACACATCAAACTGCATGATGTGGATGCCAATGATATGATTCTGGAGACAGTAGTAGATGATGTGTTCTTTGACCAAGTCTACTGA
Protein Sequence: MEFTSLILPLTKNICRTCLAESETEMLLNVQDLIEHEMIKIKLIDILVFLNCLENNDEENWPSGMCASCVSTALVSYNFKLNCLKANATLSQIFIQTSPSNHRSDIDSIDVNVVYQDHEYDVPLFSSQPALDFDTNMTNLPVNKEVTPLPPVTEITSAEQPPRKEGEKRYACTLCNKSFTRIYGLRYHMTKHSNFRKYLCPRCGKCFYNANGLRQHSISHQETGQFKCGFCHKTYKSRQSLKEHFRVAHSNNRKLFVCVTCGKSFTAKSTLMMHIRSHNGEKKFVCDHCPKAYTRASYLRAHSLIHTGQEKPRPFLCQKKGCDRSFVTKNSLLVHIAHAHTLERPHKCNICYKEFATVSGLKIHRDSHSNKAIDCNICGKSLANKRVLQKHIKLHDVDANDMILETVVDDVFFDQVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680908;
90% Identity: iTF_01135075;
80% Identity: iTF_00342405;