Eocu000128.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:1043453-1044556[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.5 2.4e+03 0.0 0.1 22 46 9 33 2 40 0.79 2 9 2.8 1.9e+03 0.4 0.0 21 45 36 60 28 67 0.81 3 9 0.13 87 4.6 0.1 21 45 64 88 57 96 0.85 4 9 0.35 2.4e+02 3.3 0.2 22 45 121 144 108 151 0.84 5 9 1.4 9.4e+02 1.3 0.0 21 45 148 172 144 179 0.85 6 9 0.012 8 8.0 0.0 21 52 176 207 171 208 0.91 7 9 0.38 2.6e+02 3.1 0.2 23 51 206 234 204 237 0.82 8 9 0.0087 5.9 8.4 0.0 21 52 260 291 252 293 0.90 9 9 0.015 10 7.6 0.1 23 46 290 313 284 320 0.84
Sequence Information
- Coding Sequence
- ATGCACTCGAGGACTCACACCGTCAAAAAACCATATCAGTGTGTTGAGTGTGAGGTAACATTTTGTGAATCCTCGTCGCTGAAAAAGCACATGAGGAcacacactggtgaaaaaccatacaaatgtgtcgagtgtgagGAAACATTTTCTCTATCCTCGTCACTAGGAAggcacatgaggactcacacaggcgaaaagccatacaaatgtatcGAGTGTGATCAGACATTCTCGCAATCTTACAACTTAAAAATACACGTCATGACTCACACCCGCGAGAAACCGTATAAGTGTGTTGAATGCGGTAAATCATTCTCACGTCCCGGCCACTTGGGAGtacacatgaggactcacacggGTAATAAACCATTCGAATGCGTCGAGTGTTGTGAATCATTCTCGCAATCCTCCCACTTAAAGAGACACACGAGGACTCACACTCGTGAGAAACCATACGAATGTACAGAGTGCGGGAAAACATTTTCGGAATCCACGTCGTTAAGGATGCAcgtgaggactcacactggtgagaaaccattcaaatgtggCGAGTGTGATCAAAAGTTCTCACAATCTTCAAACTTATCAAAACACATGACGACTCACACTGGCGcgaaaccattcaaatgtgtcgagtgttgTGAATCATTCTCACAATCCTCCCACTTAAAGAGACACGCGAAGACTCACACTTGTGAGAAACCATACGAATGTACAGAGTGTGGGAAAACATTTTCGGTATCCACGTCGTTAAAAAtgcacatgaggactcacactggtgagaaaccattcaaatgtggCGAGTGCGATCAAAAGTTCTCACAATCTTCAAACTTGTCAAaacacatgaggactcacactggcgcgaaaccattcaaatgtgtcgagtgttaCCAAACGTTCTCACAATCCGTCAACTTAACGGcacacatgaggactcacactggcgAGAAACCGTACCAGTGTGTGAATAATTGTGACGCGTCTTTTGCGACGTTGTCAGGCCTAAACAGACACATGAAAATTCACAGGGGGGAAATGATTCAAGTGTGCATGTTCCAGCATCTTGAGAAGCCGCAGGAGAAAAGCCATTCACATCCGTAG
- Protein Sequence
- MHSRTHTVKKPYQCVECEVTFCESSSLKKHMRTHTGEKPYKCVECEETFSLSSSLGRHMRTHTGEKPYKCIECDQTFSQSYNLKIHVMTHTREKPYKCVECGKSFSRPGHLGVHMRTHTGNKPFECVECCESFSQSSHLKRHTRTHTREKPYECTECGKTFSESTSLRMHVRTHTGEKPFKCGECDQKFSQSSNLSKHMTTHTGAKPFKCVECCESFSQSSHLKRHAKTHTCEKPYECTECGKTFSVSTSLKMHMRTHTGEKPFKCGECDQKFSQSSNLSKHMRTHTGAKPFKCVECYQTFSQSVNLTAHMRTHTGEKPYQCVNNCDASFATLSGLNRHMKIHRGEMIQVCMFQHLEKPQEKSHSHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678732;
- 90% Identity
- iTF_00678732;
- 80% Identity
- iTF_00678732;