Eocu000374.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:3450082-3460864[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.11 78 4.8 0.0 21 45 59 83 50 90 0.84 2 7 0.11 72 4.9 0.1 21 47 87 117 83 124 0.79 3 7 0.53 3.6e+02 2.7 0.1 21 46 125 150 119 156 0.85 4 7 0.16 1.1e+02 4.4 0.1 21 46 153 178 148 183 0.88 5 7 1.2 7.9e+02 1.6 0.0 21 45 185 209 181 214 0.90 6 7 0.22 1.5e+02 3.9 0.0 21 44 241 264 235 268 0.89 7 7 0.14 95 4.5 0.0 21 51 269 299 265 302 0.86
Sequence Information
- Coding Sequence
- ATGAGAACTCACATAGGTGAAAAACGATACAAATGTGTTGACTGTGGTAATACATTCTTACGATGCTCACATTTAACAgaccacatgaggattcacactggtgtgAAACCATACAGTTGTGTTGAGTGCGATAAAACATTCGCACGCTTGAAAAGCCACATGAGAACTCATACTGGTGAAAgaccattcaaatgtgttgagtgtgataataCATTTGCACAGTCTGCAAATTTAACAGCCCACATgcggactcacactggtgagaaaccatacaagtGTGCTGAATGTGATAAATCATTTGCACAATCGTCAAACTTAATAgggcacatgaggattcacacggAATTAAGAACGCACATTAGGATTCACTCCGGTGAGAAACCGTATTGTTGTCTTGAATGTGATAAAGTATTTGGACTATCCTCTCACTTAACAAGACATATTAGAACTCATACTGGggagaaaccatataaatgtgcaGAGTGTTATAAAACTTTCTCAGATCCCTCCAGTTTAACAAGGCATATGACGATCCATTTGAGGATCAACACTGATGAAAAACCATTCATATGTCTTGAATGTGATATAATATTTACCCATTCCTCAGCATTAAAAAAGCACATGAAGACTCATTCTGGCAAAAGACGGTACAggtgtgttgaatgtgatagaATATTCTCAAATTCCACTAGCTTGACATACCACATGAGAACCCACACTGGTGAAAGACCATTCAAATGTGCTGAGTGTGGTAATACATTCTCACaatcttcaaatttaataacccacatgagaactcacactggtgagaaaccgtACAAATGTGCAGAATGTGATAAATCATTTGCACAATCCTCAAACTTAATAgggcacatgaggattcacactggtgagaaaccatataaatgcCCCTGCCGTGCCCTCAGATCCTGCCGCATCGGCCCAGGACCGCTTATTTGGGTTAACCCTTATTCACAGCTAACCGTCACAACTGATGGCCGTTCGCTATCCGCCACCTGCGATTCCCCCGTCCAGTCCCTGAGGCTCGCCCTAGGATCTTGGTATTTATCAGAATGCAATGACAAGTTGTTTGATGACTTGAAGCTGGAATGTCAGGTCTATCTTTACAACTTGTTGCTCATGAAGATTCAGGAGCCGCCTTTGTTCGTCCTCGCGTATCCTTCGGGACTTGAGAAAATTCTTCCTCCACTTTCACGTGCTCGAGGGACGAAGCGTACCTTCTCAGCTGTAGCTATTTGTCTCCAAGACTGTGAATATTACGGTGACATGCGTGTAGCTCATTTGACTGGTTTTGCCTGA
- Protein Sequence
- MRTHIGEKRYKCVDCGNTFLRCSHLTDHMRIHTGVKPYSCVECDKTFARLKSHMRTHTGERPFKCVECDNTFAQSANLTAHMRTHTGEKPYKCAECDKSFAQSSNLIGHMRIHTELRTHIRIHSGEKPYCCLECDKVFGLSSHLTRHIRTHTGEKPYKCAECYKTFSDPSSLTRHMTIHLRINTDEKPFICLECDIIFTHSSALKKHMKTHSGKRRYRCVECDRIFSNSTSLTYHMRTHTGERPFKCAECGNTFSQSSNLITHMRTHTGEKPYKCAECDKSFAQSSNLIGHMRIHTGEKPYKCPCRALRSCRIGPGPLIWVNPYSQLTVTTDGRSLSATCDSPVQSLRLALGSWYLSECNDKLFDDLKLECQVYLYNLLLMKIQEPPLFVLAYPSGLEKILPPLSRARGTKRTFSAVAICLQDCEYYGDMRVAHLTGFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678819;
- 90% Identity
- iTF_00678819;
- 80% Identity
- iTF_00678819;