Eocu001087.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:15216876-15217991[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.15 1e+02 4.4 0.1 20 48 31 59 27 63 0.87 2 10 0.0047 3.2 9.3 0.1 21 52 60 91 56 92 0.88 3 10 0.63 4.3e+02 2.4 0.0 21 52 88 119 85 121 0.88 4 10 5.6 3.8e+03 -0.6 0.0 23 52 174 203 164 205 0.82 5 10 8 5.4e+03 -1.1 0.0 21 52 200 231 196 233 0.83 6 10 1.2 8.3e+02 1.5 0.0 24 46 231 253 226 259 0.80 7 10 0.26 1.7e+02 3.7 0.0 21 45 256 280 251 283 0.89 8 10 0.059 40 5.7 0.0 21 48 284 311 281 315 0.87 9 10 0.14 92 4.6 0.0 21 44 312 335 309 338 0.90 10 10 0.09 61 5.1 0.0 21 46 340 365 335 370 0.85
Sequence Information
- Coding Sequence
- ATGTACACTAATGGAAATTCTTccagttgtgttgagtgtgataaaacaaaCTCACAATCCTCGCGCTTTACAAACAACATAAAGATTCATAGTAGTGAgaagccatataaatgtgttgagtgtgatcaATCATTTTCACAAACATCAAACTTAATAACCCATATGAGAATacacacaggtgaaaaaccttaCAAATGTGTTGTGTGTGATACAACATTCTCACAATCCTCCCACCTAAAAAGCCACTtaagaattcacactggtgagaaaccatacaagtgtgttgagtgtgataaaaattTCTCAGAATCTTCAAGTTTAAGAActcacatgaggattcacacaggtgtaaaaccatacaaatgtgttcaGTGTGATGAAACATTCTCACACCCCTCACAATTAAACCGTCACTtaaggactcacactggtgagatgCCATACAAATGTGTGGAGTGTGATAAAACGTTCTCGGAAATGTCCAGCTTATTAAAACACATGAGTATTCACACCGGTgtgaagccatacaaatgtgctgAGTGTGATAAAGCATTCTCACACTCCTCCCATTTAACAAACCActtgagaattcacactggtgagaaaccatacaaatgtgttgagtgtgataaaaattTCTCAGAATCCTCAAGCTTAACAAcacatatgaggattcacacaggtgtAAAACCTTAtgaatgtgttgagtgtgatgaATCATTCTCACACTCCTCACAATTAAAACGTCActtgaggactcacactggtgagaagccatataaatgtgtagagtgtgataaaGCATTCTCTCAATCATCAAACTTAATAACCCACATGATGATTCACACAGGCGAGAGACCACACAAATGTGttgtgtgtgataaaacattctcaaaatCTGGAAACTTAACaacacacatgaggattcacactggtgaaaagccatataaatgtgttgtgtgtgataaaacattctctcaATCATCAAATGTTGTAAGCCACATGAGGAGTCACACAGgcgagaaaccatacaaatgtgctgTGTGTGAAAAATCATTCTCACAATCCTCAAAATTAACAatccacatgaggattcacactggagaGAAATCTTAA
- Protein Sequence
- MYTNGNSSSCVECDKTNSQSSRFTNNIKIHSSEKPYKCVECDQSFSQTSNLITHMRIHTGEKPYKCVVCDTTFSQSSHLKSHLRIHTGEKPYKCVECDKNFSESSSLRTHMRIHTGVKPYKCVQCDETFSHPSQLNRHLRTHTGEMPYKCVECDKTFSEMSSLLKHMSIHTGVKPYKCAECDKAFSHSSHLTNHLRIHTGEKPYKCVECDKNFSESSSLTTHMRIHTGVKPYECVECDESFSHSSQLKRHLRTHTGEKPYKCVECDKAFSQSSNLITHMMIHTGERPHKCVVCDKTFSKSGNLTTHMRIHTGEKPYKCVVCDKTFSQSSNVVSHMRSHTGEKPYKCAVCEKSFSQSSKLTIHMRIHTGEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678703;
- 90% Identity
- iTF_00678703;
- 80% Identity
- iTF_00678703;