Eocu001294.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:18790855-18791991[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.32 2.1e+02 3.4 0.5 27 51 39 63 32 65 0.75 2 9 0.25 1.7e+02 3.7 0.0 21 52 61 92 57 94 0.87 3 9 1 7.1e+02 1.7 0.0 23 52 91 120 87 122 0.86 4 9 0.29 1.9e+02 3.5 0.1 21 52 145 176 141 178 0.87 5 9 0.011 7.6 8.0 0.0 21 50 201 230 193 232 0.86 6 9 0.13 85 4.7 0.0 21 52 229 260 226 262 0.85 7 9 0.065 44 5.6 0.1 21 43 285 307 277 312 0.89 8 9 0.26 1.8e+02 3.7 0.3 21 52 313 344 308 345 0.84 9 9 0.067 46 5.5 0.0 22 46 342 366 337 371 0.89
Sequence Information
- Coding Sequence
- ATGACTCATACTGTTGAAAAGTCCTTCAGATGTGTTGAGTGTGAGAGGACATTCTCTCAgctctcaaaattaaaaaagcactttaggattcacactggtgagaaacgaTATCACTGTGTTGAGTGTGACACTTGTTTTGTTCGGTCATCAGACCTAAGAAGACATATCAGGGTTCACACCGGAGAAAAGCCATACAAGTGTGTTGtgtgttttaaaaacttttcatattCAGGTGACCTAACAACCCACATGATGATTCATACTGGTacaaaaccatacaaatgtgcagAGTGTGATAAAGCATTCTCGAAATCCTCAAACTTAACAgaccacatgaggattcacactggtgtaAAACCATACAGCTGTGATGAATGTGGTAAAGCATTCTCAAAATCCTCTCACTTAAAAGCCCACATTAAGATTCACAGTGGTGAAAAACCACATAAatgtgtagtgtgtgataaGAGGTTCTCACAATTAACCAACTTAACAATCCACATGCGGACTCACACTTGTGTAAAGCCTTACAAATGTGATGACTGTGGCAAAAATTTCTCACAATCGTCACACTTATCAAGCCACATGAAGACTCACTCTTGTGAGAAACCATACCAGTGTGGTGAGTGTGATACATCATTTGCTCAGTCATGGAACCTAAAGAGTCATATCAAAATACACACTGGAGAAAAACCATTTCAGTGTTCTTTGTGTGGAAAAACATTTACACATGCGAGCAACCTAAAAAGCCACATGATGATTCACATGGCTGAAAAACCATaccaatgtgttgagtgtgataaaatattctcaacGTCCTCACTCTTAACAAaccacatgaggactcacactggcgAGAAACCATACCAATGTATtcagtgtgataaaacattctcaaaatCATCAAACTTAAAAAGGCACTcaaggactcacactggtgaaaaaccatacaattgTGTCGAGTGTAACACATCTTTTGCCGAGTCATCATGCCTGGCaagacacatgaggattcatactggaCAAAAACCTTATCAATGTACAGTATGTGGAAAGACATTTGCTCAATCTAGCAGCTTAAAAAGTCACCTGGGAATTCACACTGGAGGCAAGTATTCTAGTGTTCAGTGtgattaa
- Protein Sequence
- MTHTVEKSFRCVECERTFSQLSKLKKHFRIHTGEKRYHCVECDTCFVRSSDLRRHIRVHTGEKPYKCVVCFKNFSYSGDLTTHMMIHTGTKPYKCAECDKAFSKSSNLTDHMRIHTGVKPYSCDECGKAFSKSSHLKAHIKIHSGEKPHKCVVCDKRFSQLTNLTIHMRTHTCVKPYKCDDCGKNFSQSSHLSSHMKTHSCEKPYQCGECDTSFAQSWNLKSHIKIHTGEKPFQCSLCGKTFTHASNLKSHMMIHMAEKPYQCVECDKIFSTSSLLTNHMRTHTGEKPYQCIQCDKTFSKSSNLKRHSRTHTGEKPYNCVECNTSFAESSCLARHMRIHTGQKPYQCTVCGKTFAQSSSLKSHLGIHTGGKYSSVQCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678692; iTF_00678701;
- 90% Identity
- iTF_00678692; iTF_00678701;
- 80% Identity
- iTF_00678692;