Eocu000438.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:4226901-4228004[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0097 6.6 8.2 0.1 22 48 5 31 2 36 0.86 2 8 3.7 2.5e+03 -0.0 0.0 21 46 116 141 108 147 0.83 3 8 0.039 26 6.3 0.0 21 48 144 171 140 175 0.86 4 8 0.0033 2.2 9.7 0.1 21 52 172 203 167 205 0.86 5 8 1.7 1.2e+03 1.0 0.1 21 44 200 223 196 227 0.88 6 8 0.084 57 5.2 0.1 21 47 228 254 220 261 0.82 7 8 0.16 1.1e+02 4.4 0.0 21 48 284 311 270 315 0.87 8 8 0.04 27 6.3 0.1 21 52 312 343 308 345 0.87
Sequence Information
- Coding Sequence
- ATGGACACTATCGAAAAACCTTACAGATGTGCAGAATGTGGTAAAACATTCTCACAATCGTGCAACTTAACAAggcacatgaggactcacacaggtgtaaagccatacaaatgtgttgaatgtgctACATCATTTGCTCACTTCACCACCTTAATAAATCACAccagaattcacactggtgtaaagccatacaaatgtttaGAGTGTGGTAAGACATTTTCACAATCCTCCCATTTAACAATacacatgagaactcacactggtgaaaaaccgtataaatgtgttgagtgtgataaaacattctcaactTCCACACACTTGATTACCCATGTTAGGactcacacaggtgaaaagccatacaaatgtcttgagtgtgataaaacattttctaaatcaTCTCACTTAACAAAACACATTAAGACTCACACTGGAGAAAAACCGTACAAATGTGTGGAGTGTGATAAGACATTCTCACAATCATCAAACTTAACTcaccacatgaggattcacagtGGTGAGAAACCTTATGAATGTATTGAGTGTTATGCTTCTTTTACTGTGTCATCAGCTCTAACAAGAcatatgagaattcacactggagaaaagccatacaaatgtgctgCATGTGATAAATCATTCTCGCGATCCTTCAACTTAACAATACACATGAGGACTCACTCTGGAGAAAAACCTCACAAATGTGTTGCGTGCAATAAAACATTCACACGATCCTCAAACTTAACAGAACATATGAGGACTCATACTGGGAAAAAACCGTACCATTGTCTTGAGTGTGATAAGACATTTGCACAGTCCACAAGTTTAACATATCACAtcaggactcacactggtgagaaaccataccaatgtgttgagtgtgacgCCTCTTTTCCTCTGTCATCGGACCTAACaagacacatgagaattcacactggagaAAAACCATTCCGGTGTGCGTTGTGTGGAAAAACATTTGCACAATCTAGTCACTTCAGAAGCCACATGAGAATCCACACTGGGGAAAAACCATTCCAGTGTGCCgagtgtttaaaaaaatttactaattcaaGTCACCTAACGtcccacatgaggattcactgctga
- Protein Sequence
- MDTIEKPYRCAECGKTFSQSCNLTRHMRTHTGVKPYKCVECATSFAHFTTLINHTRIHTGVKPYKCLECGKTFSQSSHLTIHMRTHTGEKPYKCVECDKTFSTSTHLITHVRTHTGEKPYKCLECDKTFSKSSHLTKHIKTHTGEKPYKCVECDKTFSQSSNLTHHMRIHSGEKPYECIECYASFTVSSALTRHMRIHTGEKPYKCAACDKSFSRSFNLTIHMRTHSGEKPHKCVACNKTFTRSSNLTEHMRTHTGKKPYHCLECDKTFAQSTSLTYHIRTHTGEKPYQCVECDASFPLSSDLTRHMRIHTGEKPFRCALCGKTFAQSSHFRSHMRIHTGEKPFQCAECLKKFTNSSHLTSHMRIHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678699;
- 90% Identity
- iTF_00678699;
- 80% Identity
- iTF_00678699;