Eocu000058.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:550708-551925[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0049 3.4 9.2 0.1 21 48 6 33 2 38 0.86 2 8 1.7 1.2e+03 1.1 0.0 22 49 63 90 58 94 0.84 3 8 0.087 59 5.2 0.1 21 46 90 115 86 122 0.89 4 8 0.00068 0.46 11.9 0.0 22 52 203 233 199 234 0.87 5 8 0.32 2.2e+02 3.4 0.1 21 47 230 256 226 261 0.84 6 8 0.16 1.1e+02 4.4 0.2 21 48 258 285 253 291 0.85 7 8 0.014 9.5 7.7 0.1 16 51 310 344 304 346 0.81 8 8 1.2 8.3e+02 1.5 0.2 21 52 342 373 338 374 0.87
Sequence Information
- Coding Sequence
- atgaggactcacactggtgaacAACCATTTCATTGTGTGGTGTGTGGAAAAAGATTTGCAGACTCAAGCAGCCTAAGAAGACACACAAGAATTCACACCGGGGAAAAACCGTACAAATGCGTCGAGTGTGATGTCTCATTTACTCTGCCGTCGTACCTAACGAAACACATGAAAATTCATACCGGGCAAAAACCCTTCCAGTGCAGCGAGTGTTTGAAATACTTTTCAACTTCAAGTAACCTGACATCCCACATGAGGGTGCATAccggtgaaaaaccatacaaatgctgtgtgtgtgataaaacattctcacaatCTTCACACTTAACAAGTCACATTAAGATTCACGTTGGAGAAAAACGACACAAATGTGTCGACTGTGATGAcgcattttcattttcatcagAACTAACAAAACACATGATGATACATACTGGTGATAAACCATACCAATGTAATGACTGTGATGCATCTTTTGGTCAGCTGTATTACCTAACGTCCCACGAGAAAATTCacactgaaaaaaaatcatatcagtgtgttgagtgttttaGAAGTTTTTCAACTGCAAGTTATCTGACAACCCACATGAAGATTCACACCGCTAAAAAGCCATTCCAATGTGCTGTGTGTTTTAATACATTTGCATACTCTGGCAGCCTGAGGCGGCACTTGAGAATTCACTCAGGAGAAAAACCATTCCAATGCTCTCAGTGTGATTCCACATTTACTCTGTCATCGGACTTATCAAGACATATGAGAACTCACACTAATGAGAAACCTTACCAATGTGAAGAGTGTCATGCAACTTTTGCTCAGTTATCTTACCTAAAAAAGCACACGAGAATTCACACAGGGGAAAAACCATACcaatgtgtagagtgtgataaaacattcacacaaaCCTCAAGCTTAACAGACCACATGAGAagtcacactggtgaaaagccataccaATGTGcagtgtgtgataaaacattcacaCAGTCCTCAACCTTAACAAgtcacatgagaattcacactggcgAAAAGCCGTACCAGTGTGTCGAGTGCGATAAAACTTTCATACAATCCTCAAGTTTAATGAGTCACATAAGAAATCACCACCGTGAGAGACCATTccaatgtgtcgagtgtgataaaAGATTTTCACGGCCCTCATACTTGGCAgaccacatgaggattcatgtTGGCGGGAAAACCGTTCCAATGTGTTGA
- Protein Sequence
- MRTHTGEQPFHCVVCGKRFADSSSLRRHTRIHTGEKPYKCVECDVSFTLPSYLTKHMKIHTGQKPFQCSECLKYFSTSSNLTSHMRVHTGEKPYKCCVCDKTFSQSSHLTSHIKIHVGEKRHKCVDCDDAFSFSSELTKHMMIHTGDKPYQCNDCDASFGQLYYLTSHEKIHTEKKSYQCVECFRSFSTASYLTTHMKIHTAKKPFQCAVCFNTFAYSGSLRRHLRIHSGEKPFQCSQCDSTFTLSSDLSRHMRTHTNEKPYQCEECHATFAQLSYLKKHTRIHTGEKPYQCVECDKTFTQTSSLTDHMRSHTGEKPYQCAVCDKTFTQSSTLTSHMRIHTGEKPYQCVECDKTFIQSSSLMSHIRNHHRERPFQCVECDKRFSRPSYLADHMRIHVGGKTVPMC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678695;
- 90% Identity
- iTF_00678695;
- 80% Identity
- iTF_00678695;