Eocu042445.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- lolal
- Assembly
- GCA_034510155.1
- Location
- CM067382.1:59428645-59447275[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.9e-05 0.04 15.3 1.2 20 48 272 300 257 304 0.87 2 3 0.35 2.4e+02 3.2 0.1 23 45 303 325 301 330 0.87 3 3 1.5e-05 0.01 17.2 0.4 21 48 387 414 379 421 0.86
Sequence Information
- Coding Sequence
- ATGGCCGAGGACCAACAATTTTGTCTGAGATGGAATAATTTCCAGATGAACATCACATCACAATTTGAGGCGCTACGTGATGAGGAAGATTTTGTTGATGTAACTTTGGCATGTGAAGGTCAGCGCTTGAAAGCTCATAAAGTGGTGTTATCTGCATGCAGTCCTTATTTCAAAGAGTTGTTCAAGAGCAACCCATGTAAGCATCCAATACTATTCATGAGAGATGTTGAATTCCGGCACTTAAGATCTCTTGTGGAATTCATGTATGCTGGAGAAGTAAATGTAGCGCAGGCACAATTATCTGCTTTCCTGCGTACAGCTGAGTCATTGCAAATTAGGGGCTTAACAGAAGCTCCACGTCATAGTAGGTTTGATGGACATAGCCATAACTCTTCTGACAGCTCTCATTCCCACCGTGCATCAAAAAATGGTCCTCCTACTTCACCTGATGTGGGGGGTGTAGAAGATGACGACGTTCTAAGTTTGAGTCCATCTGCATCACCTTCACCTCCTTCAAAACGACAGTGTACTGGTGCAGATGCAACTAATATCAAACGTGAGATTCCAGATCTTGTGGAGcCTAAATTAGAAGCACCTGATTACAGTAGTGATGGTGAAAGCAAAGCAGACAGTGTTGGTGGAGCAGTTTTTCTTGGTCTTGATAGTCAAATGGAAATTAAGGCTTCATTTTCTGGTGGAGGTTTACAGGGAGGACTGGAGATGTTGCCTGGTACTTCAACTGCCCACAATTTTCTGACGGATGTCTCAGCAACGCAGGATCCTAGCTCCCAAGCAGCTGACCACCGCAAACTGCACTCCCTGGACCCGAGGCCATGCCCCATCTGCTTCCGCATGTACAGTAACCTGTCGAACCTGCGCCAGCACCTCCGTCTCATACACAACCCTCAGACAGTGGCTTGTCCGCTGTGTAGCAAGCCCTTCAAGACAAAGCTGTACCTGAAGCGCCACCTCATGAGCTTCCACGAGTTGCTCTGCGGCTCTCCGAAGCAGCAGACCACACAGCAGCCTCAGGCAGATTTCTTCCCTCCACCACCACAGGTTGTATTGGCTGAGGATCCTGGGTCTGGGAAAGATGAGGGAGTGTTTGTCAGCCCATATCGATCTTCCATGAGACCAGACGAGCCACGCAAAATTCGATGGGAGGACCCCAGGCCTTGTCCCCTATGTCAGCGCGTCTACAGTAACAACAGCAACCTGCGGCGGCATATGAAGATCGTTCATGGTCCACCAAGACCGGGAACAAGGGCCTACTACAACTTCAAGGAGACTCCTTGCTTATCAGGAACCCAACGGCTCTGGACCCCTCCTCCTCTCCTGCGGTGGAAAGGATCATCTTCTTGCGACTTCTCTCCAGGGCATTCAGCCTCGTCTATTCCTGAATTGCGGGAAGGCAGAGATATGGTTCCATTAGCACCAGGAATTTTTGTACCTGCCAGTCTTCTGCAGAGGATAAATAGAGCAGACTACCGCAAAATGACTAGAGGACTTGCTACTGCTCTTTTTTCGCCTCTTGAGTTGGGATCAAGTTCTGTAACAGGACAGCGGTGGACAAGGGCTGCATATTGCTCTAGTAGGCCAACCAAACCAGCTCTAGATAGGCGAAGAGTGGAGGCTATACTAGTGTCACGTTACCACGCTAAGGAGCTGTTGGACTCTGTGCGCGACAACACAACTTTGCTCCAGAGGGTCATAACTGGGGACAAATCATGGGCTTATGATTATGACGTGGAAACCCAAATCTCAATCATCACAATGGAAGCTGCCGCATGA
- Protein Sequence
- MAEDQQFCLRWNNFQMNITSQFEALRDEEDFVDVTLACEGQRLKAHKVVLSACSPYFKELFKSNPCKHPILFMRDVEFRHLRSLVEFMYAGEVNVAQAQLSAFLRTAESLQIRGLTEAPRHSRFDGHSHNSSDSSHSHRASKNGPPTSPDVGGVEDDDVLSLSPSASPSPPSKRQCTGADATNIKREIPDLVEPKLEAPDYSSDGESKADSVGGAVFLGLDSQMEIKASFSGGGLQGGLEMLPGTSTAHNFLTDVSATQDPSSQAADHRKLHSLDPRPCPICFRMYSNLSNLRQHLRLIHNPQTVACPLCSKPFKTKLYLKRHLMSFHELLCGSPKQQTTQQPQADFFPPPPQVVLAEDPGSGKDEGVFVSPYRSSMRPDEPRKIRWEDPRPCPLCQRVYSNNSNLRRHMKIVHGPPRPGTRAYYNFKETPCLSGTQRLWTPPPLLRWKGSSSCDFSPGHSASSIPELREGRDMVPLAPGIFVPASLLQRINRADYRKMTRGLATALFSPLELGSSSVTGQRWTRAAYCSSRPTKPALDRRRVEAILVSRYHAKELLDSVRDNTTLLQRVITGDKSWAYDYDVETQISIITMEAAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678563;
- 90% Identity
- iTF_00678563;
- 80% Identity
- iTF_00678563;