Eocu000440.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:4312408-4313703[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.28 1.9e+02 3.6 0.1 21 44 32 55 24 64 0.86 2 10 6.8 4.6e+03 -0.9 0.0 22 48 89 115 84 119 0.82 3 10 0.035 24 6.4 0.0 21 46 116 141 108 149 0.86 4 10 2.9 1.9e+03 0.3 0.0 20 48 171 199 155 203 0.82 5 10 0.0016 1.1 10.8 0.1 21 52 200 231 192 233 0.89 6 10 0.13 88 4.6 0.0 21 49 284 312 276 315 0.85 7 10 0.12 81 4.7 0.0 21 45 312 336 308 344 0.87 8 10 1.8 1.2e+03 1.0 0.0 21 51 340 370 335 372 0.85 9 10 0.55 3.7e+02 2.6 0.0 21 52 368 399 363 400 0.87 10 10 0.37 2.5e+02 3.2 0.0 21 43 396 418 392 422 0.91
Sequence Information
- Coding Sequence
- ATGTATGCTCATAGAAAGACttacaaatgtgtagagtgtgataaaGTTTTCTCCAAACTCTCAAACTTAACCAAGCATATAagaattcacacaggtgagaaaccatacaaatgtgttgaatgtgacaAATCATTCTCACAGTCATCAAACTTAACACAACACaggaggactcacactggtaagaagccatacaaatgtgctgaatgtaataaatcattCTCAGCATCCTCTAGCTTAACAAcccatatgaggattcatatgGCTGACAAACCATTCAATTGTGTAGAGTGTGGTAATTCCTTTTCAAAGTCCTcacatttaaaagaacacatgaggattcacactggcgagaaaccatttaaatgtgcagagtgtgataaattattttcacactcCTCAAATTTAAGAACCCACATGAGAGCTcatactggtgagaaaccatacaaatgtgttgagtgtgataaaactttCTCACATCTCTCAAGCTTAAATAAACACATGACTGTTCACAgtggtgagaaaccatataaatgtgttgagtgtgataaaactttCTCACAACTCTCAAGCTTAAAtaaacacatgaggattcacagtGGTGAGAAACCCTTCAAGTGTGTTGAGTGCTATATAACTTTCTCCCAATCCGCAAGTTTAACAaaacatatgaggattcatactgttgagaagccatacaaatgtgttgagtgtgatgaAACTTTCTCACAACTCTCAAGCTTAAATgaacacatgaggattcacagtAGTGAGAAACCATTCAAGTGTGTCAAGTGTGAAAAAACATTCTCACTTCTCTCAAGTTTAAATCAACACATGCGGATTCACAGTGGTGAGAAACCTTTCaagtgtgttgagtgttttCTAACTTTCTCACAATCCGGAAGTTTAACAAGCCATATGaagattcacactggtgaaaagccatacaaatgtattGAGTGTCTTAAATCATTCTCACAATCCTCTAACTTAACAAAACACtggaggactcacactggtgagaaaccatacaaatgtgttgaatgtgaacAAACTTTCTCAGATTCTTCAAGCTTGAAtaaacacatgaggattcacactggtgaaaaaccgtACAATTGTGTTGAATGTGATCAAAATTTCTCAGAATCTTCAACGCTGAAGAAACActtgaggattcacactggtgaaaagccttacaaatgtgttgagtgtgataaagtATTCTCAAGCTCCTCAAACTTAAAAATGCACAAgagaactcacactggtgagaattCAAATAGTTGCTTTTGA
- Protein Sequence
- MYAHRKTYKCVECDKVFSKLSNLTKHIRIHTGEKPYKCVECDKSFSQSSNLTQHRRTHTGKKPYKCAECNKSFSASSSLTTHMRIHMADKPFNCVECGNSFSKSSHLKEHMRIHTGEKPFKCAECDKLFSHSSNLRTHMRAHTGEKPYKCVECDKTFSHLSSLNKHMTVHSGEKPYKCVECDKTFSQLSSLNKHMRIHSGEKPFKCVECYITFSQSASLTKHMRIHTVEKPYKCVECDETFSQLSSLNEHMRIHSSEKPFKCVKCEKTFSLLSSLNQHMRIHSGEKPFKCVECFLTFSQSGSLTSHMKIHTGEKPYKCIECLKSFSQSSNLTKHWRTHTGEKPYKCVECEQTFSDSSSLNKHMRIHTGEKPYNCVECDQNFSESSTLKKHLRIHTGEKPYKCVECDKVFSSSSNLKMHKRTHTGENSNSCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678668;
- 90% Identity
- iTF_00678668;
- 80% Identity
- iTF_00678668;