Eocu000377.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:3484445-3485977[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.025 17 6.9 0.0 21 47 4 30 2 35 0.88 2 11 0.091 62 5.1 0.0 21 46 32 57 28 63 0.86 3 11 0.22 1.5e+02 3.9 0.1 21 48 60 87 55 91 0.86 4 11 0.066 45 5.6 0.0 21 48 88 115 84 120 0.85 5 11 2.3 1.5e+03 0.7 0.1 21 45 170 194 160 202 0.83 6 11 1.7 1.2e+03 1.1 0.0 23 46 256 279 253 286 0.84 7 11 1.3 9.1e+02 1.4 0.0 21 47 282 308 277 313 0.83 8 11 0.19 1.3e+02 4.1 0.1 21 52 310 341 304 343 0.87 9 11 0.8 5.4e+02 2.1 0.0 21 46 422 447 418 453 0.86 10 11 0.09 61 5.1 0.0 21 45 450 474 442 481 0.82 11 11 0.24 1.6e+02 3.8 0.0 21 46 478 503 473 508 0.87
Sequence Information
- Coding Sequence
- ATGTACACTAGTGAAAAGCCTTACAAATGTGGAGAGTGCGATAGTGCATTCCCACAATCGTCACagttaaaaaaacatatgagattccacactggtgaaaaaccatttaaatgtgccgagtgtaataaatcattttcacaaTCTTCAAACTTAACAGagcacatgaggactcacactggtgagaaaccgtacaaatgtgttgagtgtgataaaacattctcacaatCTCCACATTTAATAAgacatatgaggattcacactggtgagaaaccatacaaatgtggtGAGTGTGATAAATCTTTTTCACAATCATCGAACTTAAAAGTGCACATGATGATTCACACTGATAAGAAACCGTACAAAGATGTTAAATGTCATGAATTACTCTCCTCAACCTCGACATACCACAGGACAACTCACATTAGTAAGAAACAatacaaatgtgtcgagtgtgataaaacattctcacagTCCTCAACCTTAACAAACCACATGAGAAcacacactggtgagaaaccttacaaatgtgttgagtgtgataaaagaTTTACTCAATCTTCACatttaacaaaacattacagaactcacactggtgaaaaaccgtacaaatgtgttgaatgtgataaagcaTTCACAGAATCATCAAGACTAACAGTGCACCTGAGGACTCATACTGGTGacaaaccatacaaatgtgttgagtgtgaacAAGCATTTGCAGAATCCTCAATATTATTAGTGCACATGAGGATCCACACTGGCTacaaaccatataaatgtgttgtgTGTGAGAAAGCATTCTCAGAATCctcaaatttaacaatacacatgaggactcacactggagagaagccatataaatgtgttgtttgtgataaaacattctcacatTCCTCAAGCTTAAAATATCATACGAGGATCCACACGGGTGAAAAACCGTACAAATGTTCAGAGTGTAATCAAGCATTTTCCcaatcttcaaaattaatagaacacttgaggattcacactggtgagaaaccatacaaatgtgttcaGTGCGATAAAACATTCCGTAGAATCTCAGATTTAACAATACACATTAGGACTCACATTATTGAAAAAGCATATatatgtgttgagtgtgataaatcattttcagaatactcaatattaaaagtgcacatgaggactcacacagGTGTTAAGCCTTACAAATGTTTTGAATGTgacaaatcattttcaaaagtCTCGTGTTTAACAGCccatatgaggattcacactggtgaaaaaccatacaaatgttttgAGTGTGACAAAGCATTTTCAGAATCTTCTAATTTAACTAAGCACATGAGGACTCAttctggtgagaaaccatatgaatgtgttgtgtgtgataaaacattctcacagTCCTCATCGTTAACAATCCACTTGAGgtctcacactggtgaaaaaccatataaatgtgttcaGTGTGAGAAAGCATTCACACAATCTTCAAAATTAACAaagcacatgaggattcacacggGGGACAAACTGCAATAG
- Protein Sequence
- MYTSEKPYKCGECDSAFPQSSQLKKHMRFHTGEKPFKCAECNKSFSQSSNLTEHMRTHTGEKPYKCVECDKTFSQSPHLIRHMRIHTGEKPYKCGECDKSFSQSSNLKVHMMIHTDKKPYKDVKCHELLSSTSTYHRTTHISKKQYKCVECDKTFSQSSTLTNHMRTHTGEKPYKCVECDKRFTQSSHLTKHYRTHTGEKPYKCVECDKAFTESSRLTVHLRTHTGDKPYKCVECEQAFAESSILLVHMRIHTGYKPYKCVVCEKAFSESSNLTIHMRTHTGEKPYKCVVCDKTFSHSSSLKYHTRIHTGEKPYKCSECNQAFSQSSKLIEHLRIHTGEKPYKCVQCDKTFRRISDLTIHIRTHIIEKAYICVECDKSFSEYSILKVHMRTHTGVKPYKCFECDKSFSKVSCLTAHMRIHTGEKPYKCFECDKAFSESSNLTKHMRTHSGEKPYECVVCDKTFSQSSSLTIHLRSHTGEKPYKCVQCEKAFTQSSKLTKHMRIHTGDKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678654;
- 90% Identity
- iTF_00678654;
- 80% Identity
- iTF_00678654;