Eocu000437.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:4216522-4217682[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.33 2.3e+02 3.3 0.0 21 46 4 29 2 36 0.85 2 9 0.96 6.5e+02 1.9 0.0 23 46 62 85 56 93 0.83 3 9 1.2 8.2e+02 1.5 0.1 21 46 116 141 108 147 0.85 4 9 1.4 9.7e+02 1.3 0.0 21 44 163 186 159 191 0.86 5 9 0.00082 0.55 11.7 0.1 21 51 191 221 188 223 0.87 6 9 0.025 17 6.9 0.0 21 46 247 272 241 279 0.85 7 9 0.0038 2.6 9.5 0.2 21 52 303 334 295 336 0.87 8 9 1.6 1.1e+03 1.1 0.0 23 45 333 355 330 363 0.85 9 9 0.73 5e+02 2.2 0.1 21 44 359 382 353 385 0.87
Sequence Information
- Coding Sequence
- ATGTACAATAGTAAAAAACCTTACAAATGTTTAGagtgtaataaaacattctcacaatCAGGCAACTTAACATTtcacatgagaactcacaccCGTttaaagccatacaaatgtgttgagtgttctACCTCATTTGCTCGTTTCACCACCTTAATAAATCACATTAGGACTCATACTGGTGTAAAGCCCtacaaatgtgtagagtgtgataaGACATTCACACAATCCTCTAACTTAACAAtacacatgaggactcacactggtgaaaagccatataaatgtgtagagtgtgataaaacatttaccaCTTCCACACAATTAACAACACACATTAGGactcacacaggtgaaaagccatacaaatgtgttgagtgtgataaagcaTTCTCCAAATCATGCCACTTAAAAAAACACATGAAGACTCACACTGTTACAAACCCGTACCAAAGTATCTCAAgcttaacaaattacattaggACTTACAATGCTGATAAACCGTACCAATGTCCTGAGTGCGATGAAACATTCTCTCAACCGTCACACTTAAATAACCACATGATGATTCACAGTGGTGAGAAACCTTACAAATGTACTGAGTGTTACGCATCTTTTACGGAGTCATCAGCCTTAACaagacacatgagaattcacactggagaaaagccatacaaatgtgttgagtgtgataaatcattcCTGCGATACTTCAGTTTAACTGTACACATGAGGActcatactggtgaaaaaccacACAAGTGTGTTCAGTGTGATAAAGCATTCAAACAATCCTCTAACTTGACAAtccacatgaggactcacactggtaaGAAACCATACAATTGTCTCGAAtgtgataaatcattctcaAATTCCTCTGGCTTAAAATCCCACTTCAGAACTCACACCGGTGAGAAACCATACCACTGTGTTGAGTGTGATGCCTCTTTTCGTGTGTCATCAGCCCTAACAAGACACATAAGACTTCACACTGGACTAAAACCATTGCTGTGCACGGTGTGTGGTAAAACATTTGTACAATCTGGCCACTTCAGAATTCACATGAGAAATCACACCGGTGAGAAACCATTCCAGTGTGTTGAGTGTTACAAAAGCTTTACTAATTCAAGTCACCTAATGTCCCACATCAGAACTCACCGGtga
- Protein Sequence
- MYNSKKPYKCLECNKTFSQSGNLTFHMRTHTRLKPYKCVECSTSFARFTTLINHIRTHTGVKPYKCVECDKTFTQSSNLTIHMRTHTGEKPYKCVECDKTFTTSTQLTTHIRTHTGEKPYKCVECDKAFSKSCHLKKHMKTHTVTNPYQSISSLTNYIRTYNADKPYQCPECDETFSQPSHLNNHMMIHSGEKPYKCTECYASFTESSALTRHMRIHTGEKPYKCVECDKSFLRYFSLTVHMRTHTGEKPHKCVQCDKAFKQSSNLTIHMRTHTGKKPYNCLECDKSFSNSSGLKSHFRTHTGEKPYHCVECDASFRVSSALTRHIRLHTGLKPLLCTVCGKTFVQSGHFRIHMRNHTGEKPFQCVECYKSFTNSSHLMSHIRTHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678704;
- 90% Identity
- iTF_00678704;
- 80% Identity
- iTF_00678704;