Eocu000382.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:3558726-3561093[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.004 2.7 9.5 0.1 21 49 32 60 12 63 0.84 2 9 0.02 13 7.3 0.1 21 52 60 91 56 92 0.87 3 9 0.027 18 6.8 0.1 21 52 144 175 136 176 0.87 4 9 2.7 1.8e+03 0.4 0.0 21 48 200 227 196 233 0.83 5 9 5.7 3.9e+03 -0.6 0.0 21 48 228 255 221 259 0.83 6 9 0.021 14 7.2 0.0 21 45 256 280 249 287 0.87 7 9 0.018 12 7.4 0.1 21 52 284 315 280 317 0.87 8 9 5.4 3.6e+03 -0.5 0.0 21 46 312 337 308 344 0.81 9 9 5.1 3.4e+03 -0.5 0.0 23 51 370 398 359 403 0.80
Sequence Information
- Coding Sequence
- ATGCTCATGGATGCAAAGCCCTATATATGTCTAGAATGCGACAAACCATTCTCTCGATCCAAATACTTAAAGCAACACATGatgattcacactggtgaaaatcCAAACAAATGTGCTGAGTGTGGCAAAGCATTCTCaacatccaaaaatttaagagcACACTTAAGGATTCACACTGgcgaaaaaccatacaaatgtgctgAGTGTGGCAAAGCATTCTCAACATCCTCAAATTTAAGAGCCCACTTAAGGATTCACACTGgcgaaaaaccatacaaatgcgTTGAGTGTGGCAAAGCATTTCCACGACTATCAACCTTAAACatacacatgaggattcacactggggAAAAACCACACAAGTGTATTGAGTGTGATAAAGCTTTCAAGGAATACTCAAAGTTGAAAATACACATGAGatttcacactggtgaaaaaccatacaaatgtgctgAGTGTGGCAAAGCATTCTCAGCATCCTCAAATTTAAGAGTACACTTAAGGATTCACACTGgcgaaaaaccatacaaatgcgTTGAGTGTGGCAAAGCATTTCCACGACTATCAACCTTAAACatacacatgaggattcacactggtgaaaaaccatacaagtgTATTGAGTGTGATAAAGCTTTCAAGGAATACTCAATGTTGAAAAGACACATGAGatttcacactggtgagaaaccatttaaatgtgttgaatgtgatagaAAATTTCCTCAATCTTCGTCCTTAATAGAGcatatgagaattcacactggtgaaaaaccgtacatatgtgttgagtgttataaaacattctcaaaatCCTCAAATTTAGCAACCCACATGAGGACGCACACTGgcgaaaaaccatacaaatgtgttgagtgtgatactTCATTCAGACAATCATCAAAATTAACTCAGCACATgcggattcacactggtgagaaaccatacaaatgtgttgagtgttttaaaacattctcaGTATTCTCAAATTTAGCAACCCACATGAAGAAACACACCGGTGAAAAGccatgtaaatttattggatgtgataaaacattcacaAAATGCTCATGGTTAACAAGGCACATGAGGATTCAGACTGGTGGGAAACCGTACATTTGTATTGAGTGTGATAAAGCATTCACACAATCCTCAAGCCTACTTAGCCACATGAGGAtgcacactggtgaaaaaccatacaaatgtgtcgagtgtgataaaacattcgcAAAATCCTCATGTAAATTTAGGCATGTGCCGTTCCCTGACATCCTCTGCGTTCTCTCTCAACTCCCCAACTGTTCCAGACAGCGCCGCCCCGTCGTAAAAAAACCTTCACCTCCCTCCGACCAGCCTTGA
- Protein Sequence
- MLMDAKPYICLECDKPFSRSKYLKQHMMIHTGENPNKCAECGKAFSTSKNLRAHLRIHTGEKPYKCAECGKAFSTSSNLRAHLRIHTGEKPYKCVECGKAFPRLSTLNIHMRIHTGEKPHKCIECDKAFKEYSKLKIHMRFHTGEKPYKCAECGKAFSASSNLRVHLRIHTGEKPYKCVECGKAFPRLSTLNIHMRIHTGEKPYKCIECDKAFKEYSMLKRHMRFHTGEKPFKCVECDRKFPQSSSLIEHMRIHTGEKPYICVECYKTFSKSSNLATHMRTHTGEKPYKCVECDTSFRQSSKLTQHMRIHTGEKPYKCVECFKTFSVFSNLATHMKKHTGEKPCKFIGCDKTFTKCSWLTRHMRIQTGGKPYICIECDKAFTQSSSLLSHMRMHTGEKPYKCVECDKTFAKSSCKFRHVPFPDILCVLSQLPNCSRQRRPVVKKPSPPSDQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678676;
- 90% Identity
- iTF_00678676;
- 80% Identity
- iTF_00678676;