Eocu000188.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:1522359-1522814[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.017 12 7.4 0.0 21 45 6 30 3 37 0.86 2 5 0.7 4.8e+02 2.3 0.0 22 48 35 61 31 65 0.84 3 5 0.008 5.4 8.5 0.0 21 49 62 90 58 93 0.86 4 5 0.088 60 5.2 0.0 21 48 90 117 87 121 0.86 5 5 0.0079 5.4 8.5 0.0 21 46 118 143 114 148 0.91
Sequence Information
- Coding Sequence
- atgaggattcacactggagaGAAGCCATTTGAATGTGTTGAGTGTCTCACATTGTTCACATCATCACAGGAATTAAAAAGACATATAATGGCGCATACAGGTAAAAAGCCTTTCCAGTGTGTCGAGTGTTTCAAATCATTCACAGCATCGAATGATTTAAAAAtccatatgaggattcacactggtgaaaagccgtTCAAGTGTGTCGAGTGTTTCAAATCATTCACACGATCGAGTAATCTAAAAGAACACATGAGGATCCACACGGGTGAAAAGCCGTTTaagtgtgttgagtgttttaCATCATTCACAGCGTCAAGTCAATTGAAaacacacatgaggattcatacaggtgaaaagccatttgaATGTGTCGAGTGTTTTACATCGTTCACAGAATCAAGCCATTTAAAGAGACATATGAAAATTCACACGGGTGAGAAGTCATTTAAATGA
- Protein Sequence
- MRIHTGEKPFECVECLTLFTSSQELKRHIMAHTGKKPFQCVECFKSFTASNDLKIHMRIHTGEKPFKCVECFKSFTRSSNLKEHMRIHTGEKPFKCVECFTSFTASSQLKTHMRIHTGEKPFECVECFTSFTESSHLKRHMKIHTGEKSFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678955;
- 90% Identity
- iTF_00678955;
- 80% Identity
- iTF_00678955;