Eocu000501.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:4982811-4984094[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.018 12 7.4 0.0 21 52 32 63 22 65 0.87 2 6 0.0013 0.87 11.1 0.0 21 47 116 142 106 148 0.84 3 6 0.008 5.5 8.5 0.0 21 51 200 230 194 232 0.86 4 6 2.7 1.8e+03 0.4 0.0 21 51 256 286 248 289 0.83 5 6 5.6 3.8e+03 -0.6 0.1 21 35 368 382 348 394 0.79 6 6 0.097 65 5.0 0.1 21 44 396 419 388 423 0.86
Sequence Information
- Coding Sequence
- ATGTACACTGGTGTAAAGCAttacaaatgtgtcgagtgtgacaAAGAATTTTCAAGGTACGGCTACTTAAAAGTTCACATGAGGAcacacactggtgagaaaccgtataaatgtgttgaatgtgataaaacattctcacagTCGTCAAATTTGACAATGCATTTGAGGATTCACACCGGCGAAAAAccgtacaaatgtgttgaatgtgctAAAGCGTTCCCGCAATATTCAAGCTTGGCAAAACATATACAGGCTCACACCGGTGAGAAGcaatacaaatgtgttgagtgtgctAAAACGTTCTTACAATATTCAAGTTTGACAAAACatatgaggactcacactggtgagcaaccatacaaatgtgctgtatgtgataaaaaattctcaCAATCCTCAAATTTGACATACCACATGAACTCTCACGCTGGTgtaaagccatacaaatgtattGAATGTGATAAAGAATTCCCAAATTCCTCAGCCTTGGCATACCATGTGAGAACTCACTCTAGTgtaaagccatacaaatgtgttgagtgtgataaagaTTTCTCAACATGCTCCGACTTAACAGTTCACATGAGGAcacacactggtgagaaaccgtatacatgtgttgaatgtgataaaacgtTCTCACAATCCTCAAATTTGACAAtccatatgaggattcacactggtgaaaaaccatacaaatgtgttgaatgtgctAAACCATTTGCACAATATTCAAGTTTCTCAAAGCatatgaggactcacactggagagaaaccatacaaatgtgttgaatgtgataaagcattctcagaatctgaaaaattaaaaatccatatgagaattcacactggtgagaagccatacaaatgtgttgaatgtgataaaaaattctcaCATTCCTCAGGATTGAAATACCACATGAATGCTCACAGTGGTGTAAAGCCGTACAactgtgttgagtgtgataaaaaattcttattctcCAAAGCATTGGCATaccacatgaggactcacactggtgtaaagccatacaaatgtattGAATGTGAAAAAGAATACTCGCAGTCTTCACACTTATCAACCCACATGAGGACTCAtactggtgagaagccattcaaatgtgttgagtgttacAAGACGTTCTCAGAATTGTCAAAATTAACACTCCACATGAGGTcacacactggtgagaaaccatttgAGTGTGTTGAATGTGCTAAAACATTCTCACAATATTCAAATTTGACAAGACATATGAGGACTCACTCTGGTGATGGCCTGTAG
- Protein Sequence
- MYTGVKHYKCVECDKEFSRYGYLKVHMRTHTGEKPYKCVECDKTFSQSSNLTMHLRIHTGEKPYKCVECAKAFPQYSSLAKHIQAHTGEKQYKCVECAKTFLQYSSLTKHMRTHTGEQPYKCAVCDKKFSQSSNLTYHMNSHAGVKPYKCIECDKEFPNSSALAYHVRTHSSVKPYKCVECDKDFSTCSDLTVHMRTHTGEKPYTCVECDKTFSQSSNLTIHMRIHTGEKPYKCVECAKPFAQYSSFSKHMRTHTGEKPYKCVECDKAFSESEKLKIHMRIHTGEKPYKCVECDKKFSHSSGLKYHMNAHSGVKPYNCVECDKKFLFSKALAYHMRTHTGVKPYKCIECEKEYSQSSHLSTHMRTHTGEKPFKCVECYKTFSELSKLTLHMRSHTGEKPFECVECAKTFSQYSNLTRHMRTHSGDGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678683;
- 90% Identity
- iTF_00678683;
- 80% Identity
- iTF_00678683;