Eocu000193.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:1577836-1579191[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3 9e+02 1.4 0.0 20 48 30 58 27 62 0.84 2 11 0.014 9.2 7.8 0.0 21 46 59 84 55 90 0.89 3 11 0.11 76 4.8 0.0 23 52 89 118 85 120 0.87 4 11 3.3 2.2e+03 0.1 0.0 21 51 115 145 112 148 0.84 5 11 1.5 1e+03 1.2 0.0 22 48 172 198 169 202 0.85 6 11 0.061 41 5.7 0.0 21 51 199 229 195 232 0.87 7 11 1.9 1.3e+03 0.9 0.0 22 46 256 280 249 287 0.86 8 11 0.1 68 5.0 0.0 21 44 311 334 301 343 0.87 9 11 5.7 3.9e+03 -0.6 0.0 22 52 340 370 336 373 0.87 10 11 1.7 1.2e+03 1.0 0.0 23 52 369 398 359 400 0.85 11 11 0.33 2.2e+02 3.3 0.0 21 44 423 446 419 450 0.90
Sequence Information
- Coding Sequence
- ATGTCTGATTCAGACACATTCAAGTCTGCTGTGAGTGACCAGCAATTTACAAATTCGACTGTTTTAGAAAGTAATATAATGGATCGTACAAGTGAAAAACCGTTCAAATGTGTACAGTGTTCCAAACCATTCACAACGTCAAGTCATTTAAAAACCcatatgagaattcacactggcgAAAAGCCGTTTAAGTGTGTTGAGTGTTTCAAGTCGTTCAGAGTTTCAAGTGTTTTAAAAAGACACATGAAAATTCATACTGGTAAAAGGCCGtttaaatgtgtcgagtgtttCCTGACGTTTGCGGAATCAAGCACTTTAAAAAGGCATATGCAAATGCACACCGGAGAAAAGCCCTTTCAGTGCGTTGAATGTCTTAAATCGTTCATAAAATCGACTGACCTAAAAAttcacatgaggattcataccgGCGAAAAGCCATTTGAATGCGTCGATTGTGGTAAGGCATTTACGAGTTACAGCAAATTAAGTAGACATTTGCTGATACACTCCCCTGAAAAGCCATATAAATGTGGCGAGTGTGATAAATCGTTTACACAATCACATCATCTAACAATACACATGAGAATCCACACCGGTGAAAAGCCGTTTGAATGTGCAGTGTGCTTTAAATCATTCAAAGCATCAACtcctttaaaaattcatatgaggattcatacaggtgaaaagccatttaaatgcgGCGAGTGCGATATATCATTCACACAAGCATCTCAACTAACAATACATATGAGAAATCACACCGGCCAGAAGCcgtttaaatgtgttgagtgttttaaatcatttgtaaCATCGGGTGATTTAAAGAAGCATATCAAAATTCACACTGGGGAGAAGTCATTTAAATGTGGCGAGTGCTTTAAATTGTTCGCAGTATTAAGTGATTTAAAAAGGCACATGATGactcacacaggtgaaaagccatttaagtgttttgagtgttttaaatcattcacaacATCAACCGATTTAAAAAGGCACATGTTGACTCATACAGGTGATAAGCCATTTAAGTGTCTCGAGTGTCTTAAATCATTCACAACATCAAGCGATTTAAAAGtgcatatgaggattcatacatgtgtgaagccatttaaatgtgtcgagtgtgataaaacGTTTACATATTCACGTAGTTTAAAAGATCATATGCatattcacactggtgagaagccattcAAATGcgttgagtgttttaaatcattcacagCATCAAGTGCTTTAAATGGACATATGATGACTCATACGgatgaaaagccatttaaatgtgttgagtgtggtaaatcatttaaaagttCTAGTAATTTAACTAGACATTGGTTGACCCATAACACTTGA
- Protein Sequence
- MSDSDTFKSAVSDQQFTNSTVLESNIMDRTSEKPFKCVQCSKPFTTSSHLKTHMRIHTGEKPFKCVECFKSFRVSSVLKRHMKIHTGKRPFKCVECFLTFAESSTLKRHMQMHTGEKPFQCVECLKSFIKSTDLKIHMRIHTGEKPFECVDCGKAFTSYSKLSRHLLIHSPEKPYKCGECDKSFTQSHHLTIHMRIHTGEKPFECAVCFKSFKASTPLKIHMRIHTGEKPFKCGECDISFTQASQLTIHMRNHTGQKPFKCVECFKSFVTSGDLKKHIKIHTGEKSFKCGECFKLFAVLSDLKRHMMTHTGEKPFKCFECFKSFTTSTDLKRHMLTHTGDKPFKCLECLKSFTTSSDLKVHMRIHTCVKPFKCVECDKTFTYSRSLKDHMHIHTGEKPFKCVECFKSFTASSALNGHMMTHTDEKPFKCVECGKSFKSSSNLTRHWLTHNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678685;
- 90% Identity
- iTF_00678685;
- 80% Identity
- iTF_00678685;