Eocu000331.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:3012518-3013966[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 1.3e+03 0.8 0.0 26 52 8 34 3 36 0.82 2 15 0.69 4.7e+02 2.3 0.0 21 46 31 56 27 62 0.81 3 15 0.11 77 4.8 0.0 21 52 59 90 47 91 0.86 4 15 1.8 1.2e+03 1.0 0.0 21 46 87 112 85 115 0.89 5 15 0.13 87 4.7 0.0 21 47 115 141 107 148 0.86 6 15 0.015 10 7.6 0.0 21 48 171 198 161 203 0.87 7 15 2.4 1.6e+03 0.6 0.0 22 46 200 224 197 234 0.83 8 15 3.4 2.3e+03 0.1 0.0 22 52 228 258 220 259 0.82 9 15 0.47 3.2e+02 2.8 0.0 21 47 255 281 247 287 0.84 10 15 0.79 5.4e+02 2.1 0.1 21 46 283 308 281 313 0.89 11 15 3.1 2.1e+03 0.2 0.0 23 46 341 364 339 371 0.80 12 15 0.32 2.2e+02 3.4 0.0 21 51 367 397 359 399 0.86 13 15 0.27 1.9e+02 3.6 0.0 21 44 395 418 392 426 0.88 14 15 0.26 1.8e+02 3.7 0.1 21 44 423 446 415 456 0.85 15 15 3.6 2.5e+03 0.0 0.0 22 46 452 476 448 479 0.88
Sequence Information
- Coding Sequence
- ATGTCTGGTAAGAAACAATTTACATGTGCCGAGTGCGATAAGACATTTACAGATCCGAGTAGTTTAAAAAGGCATCTGCGGATTCACacgggtgaaaagccatttacaTGTGCcgagtgttttaaatcatttacgGAATCTGGCCTTCTAAAAATACACGcgaggattcatacaggtgaaaagccgTTCAAGTGCGTCGAGTGCGACATATCCTTCACGCAATCTGCTCAACTTGGGAAACACTTGAAAATTCACACTGGGgaaaaaccattcaaatgtgtcgagtgtttCAAATCATTCACAGATTCGAGCAGTTTGAAATGTCACATGCGGATTCACACCGGCGAGAAGCCATTCAAGTGCGCtgagtgttttaaatcatttacagaTTCAAGCTCTTTAAGGTACCACATGTACATTCACATCGGTAAAAAGCCATTCAAATGCGTGGAGTGTGATAAGTCATTCGTAGCTTCAACTAGTTTAAGAAATCATATGGCGGTTCACACTGgcgaaaagccatttaaatgtattgtgtgttttaaatcattcacacAATCGGGCCATTTAAAATCACACATGATGATTCATACGGGTGAAAAGCCGTTCAAATGTGCTGAGTGTGATATAACATTCAAGAAAGGCTGGGAATTAACAAAACACTTAAGAATCCACAatggtgaaaaacattttaaatgttctgtgtgtgataaattattcatagatTCAAGTGGTTTAAAAAGTCACATGCGGATTCATACTaatgaaaagccatttaagtgtGCTGAATGTTTTAAGTCATTCTCAACATCAGGCAATTTAAATGTTCACAcgaggattcacacaggtgaaaagccttttaaatgtcTGCAGTGTTTTAAACCATTTAGAAGATTAAGCAATTTAAATGATCATATCAGAATTCACACGGGTGAAAAGATGTTTggatgtgttgagtgtgataagtCATTCACATATGCACATACTCTAAATAGTCATATGCTCATTCACATGAACATTAAACCATTTAAATGCGCTGTTTGTTTTAAACCATTCAGACGTCTAAGTAGTTTAAATGAGCATACGAGGATTCACAccggtgaaaagccatttaaatgtgtcgaATGTGACATACGGTTCAGAGAATCGTCTAAACTGACcaaacacatgaggattcacactggcgaAAAGCCGTTCAAATGTTCCAGGTGCGATAAGACGTTCAGAGATTCAAGCACTTTAAAGAAACATACACGGACTCATTtgggtgaaaagccatttaagtgCTCTGCATGTGTTAAAACATTCACAGATCCAAGCAGCTTAAGAAGACATGTGCTGAATCACACTGGTGATAAACCGTACAAATGTGTAGAGTGCAACAAAGCATTCAGTGTTTCAAGTAGTTTGAAAAAACATATGCAACTACATGTGAGTGAAAggaaatga
- Protein Sequence
- MSGKKQFTCAECDKTFTDPSSLKRHLRIHTGEKPFTCAECFKSFTESGLLKIHARIHTGEKPFKCVECDISFTQSAQLGKHLKIHTGEKPFKCVECFKSFTDSSSLKCHMRIHTGEKPFKCAECFKSFTDSSSLRYHMYIHIGKKPFKCVECDKSFVASTSLRNHMAVHTGEKPFKCIVCFKSFTQSGHLKSHMMIHTGEKPFKCAECDITFKKGWELTKHLRIHNGEKHFKCSVCDKLFIDSSGLKSHMRIHTNEKPFKCAECFKSFSTSGNLNVHTRIHTGEKPFKCLQCFKPFRRLSNLNDHIRIHTGEKMFGCVECDKSFTYAHTLNSHMLIHMNIKPFKCAVCFKPFRRLSSLNEHTRIHTGEKPFKCVECDIRFRESSKLTKHMRIHTGEKPFKCSRCDKTFRDSSTLKKHTRTHLGEKPFKCSACVKTFTDPSSLRRHVLNHTGDKPYKCVECNKAFSVSSSLKKHMQLHVSERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678671;
- 90% Identity
- iTF_00678671;
- 80% Identity
- iTF_00678671;