Eocu000107.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:899498-900721[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 8.8e+02 1.4 0.1 25 52 33 60 23 62 0.80 2 12 1.3 8.6e+02 1.5 0.1 21 48 57 84 52 89 0.83 3 12 0.73 4.9e+02 2.2 0.1 21 44 85 108 80 113 0.89 4 12 0.0013 0.88 11.0 0.2 17 51 109 143 105 145 0.82 5 12 0.085 58 5.2 0.0 21 52 141 172 137 173 0.87 6 12 0.05 34 6.0 0.0 21 46 169 194 165 200 0.90 7 12 0.46 3.1e+02 2.9 0.5 21 46 197 222 193 225 0.89 8 12 1 6.9e+02 1.8 0.0 23 51 228 256 224 258 0.83 9 12 3 2e+03 0.3 0.1 21 46 254 279 250 286 0.79 10 12 0.32 2.1e+02 3.4 0.0 21 46 282 307 276 314 0.89 11 12 0.00027 0.18 13.2 0.0 16 48 333 365 328 369 0.83 12 12 0.1 71 4.9 0.0 21 46 366 391 364 395 0.91
Sequence Information
- Coding Sequence
- ATGGTTGGAACGGTTAAATGTGTTCAGTATCATGAGGCAAGCGATGAATCAAGTACCGGAATTAATCCGGCGAAGATTCCGAGCGGAGAGAAGCGATACAGATGTGTCGAATGTGAtcagttattttcaaaatcggATCATTTAAAAAGGCACATGAGGATCCACACCGGCGAGAAGCCGTACAAGTGCGTAGTCTGTCGTCAATCGTTTTCCCATTCATCCACTTTAATaaaccacatgaggattcacaccggCGAGAAACCGTACCGATGTGATGCCTGTGACAAATCATTCTCAGCGTCATCCGATTTAAGAAAACACAGAAGAATTCACACAGGAGAAAAACCTTACGCATGTGCTgtgtgtaataaaacatttactcaATCGGCTAATTTGATAacccacatgaggattcacaccggtgaaaagccatacaagtGTGATGagtgtaataaaacattctcatcATCATCTGATTTGAGAAAACACGTCAAGATTCActctggtgaaaagccatacaaatgtgacGTTTGTGATAAAACATATTCGGCGTCGTCTGATTTACGGAAACACGTCAGGATACACACCGGCGAAGAGCCGTACAGATGTGTTGTCTGTCGTCAAACGTTTCCCCGCTCCTcgaatttaataaaccatatgAGTATTCATACCGGTGGTGTGAAACCATACCAATGTGGCGAAtgtgataaatcattttcaaaatcagaTCATTTAAAAAGGCACATGAGGATCCACACTGGcgagaagccatacaaatgtttaGTCTGCCATCAATCGTTTTCTCAGTTATCAACTTTAATAAACCACACgaggattcacactggcgaGAAACCATACCAATGTGCTGAATGCGATCAAGCATTCACACAATCGGGTCACCTAAATAAACACATGACGATCCACACCGGTGAAAACCCGTACGAATGCGACACGTGCGACAAGACATTCTCGGCATCGTCGGATTTGATAAAGCATAGAAGAGTTCACACCGGTGAGAAGCCTTACACGTGTGCCGTGTGTGACAAAGCATTTACACAATCGGCTAATTTGATAacccacatgaggattcacactggtgaaaaaccatacagaTGTGATGTGTGTGAGAAAACATTCTCAGTGTCATCTAACTTGAGCAAACACGTCAAGATTCACTCTGGAAAAAGCCACACAAGTCTGTCGCGCGCTATAAAGGATTTGTAA
- Protein Sequence
- MVGTVKCVQYHEASDESSTGINPAKIPSGEKRYRCVECDQLFSKSDHLKRHMRIHTGEKPYKCVVCRQSFSHSSTLINHMRIHTGEKPYRCDACDKSFSASSDLRKHRRIHTGEKPYACAVCNKTFTQSANLITHMRIHTGEKPYKCDECNKTFSSSSDLRKHVKIHSGEKPYKCDVCDKTYSASSDLRKHVRIHTGEEPYRCVVCRQTFPRSSNLINHMSIHTGGVKPYQCGECDKSFSKSDHLKRHMRIHTGEKPYKCLVCHQSFSQLSTLINHTRIHTGEKPYQCAECDQAFTQSGHLNKHMTIHTGENPYECDTCDKTFSASSDLIKHRRVHTGEKPYTCAVCDKAFTQSANLITHMRIHTGEKPYRCDVCEKTFSVSSNLSKHVKIHSGKSHTSLSRAIKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678694;
- 90% Identity
- iTF_00678694;
- 80% Identity
- iTF_00678694;