Eocu000039.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:403508-414095[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.91 6.2e+02 1.9 0.0 21 51 34 64 21 67 0.81 2 7 1.6 1.1e+03 1.2 0.0 22 44 63 85 60 89 0.88 3 7 0.061 41 5.7 0.0 21 46 90 115 85 121 0.86 4 7 0.081 55 5.3 0.0 22 47 119 144 114 150 0.84 5 7 0.0032 2.2 9.8 0.0 21 46 202 227 191 233 0.83 6 7 0.11 77 4.8 0.0 22 44 231 253 226 258 0.89 7 7 0.028 19 6.8 0.0 21 50 258 287 255 290 0.87
Sequence Information
- Coding Sequence
- atgagaattcacactggtgacaAACCATTCAAATGTATTAAGTGTGATGGAACATTCTCACAATTAGGTACCTTAACACGccacatgagaactcacactggtgagaaaccatataaCTGTGTAGTGTGTGATAGAACATTCTCACGTTTAGGAAACTTAACAacgcacatgagaattcacactggtgataaaCCTTTCCCatgtgtagtgtgtgataaaacattttcacaatcctCACACTTAACATCCCACATGAGAaatcacactggtgagaaaccatacacatgtgtagagtgtgataaaaACTTCTCACAATCATCAGACTTAACAAAgcacatgagaactcacactggtgataaaCCATACACATGTATAGAGTGTGATAAAAACTTCTCACAATCATCAAACTTAACAATgcacatgagaactcacactggtgtgaaaccatataaatgtgtagTGTGTGATAGAACATTCTCACATTTAGGTAGCTTAACAGCgcacatgagaactcacactggtgataaaCCATTCAAATGTATTAAGTGTGATGGAACATTCTCACTTTTAGGTACCTTAACAAGccacatgagaactcacactggtgagaaaccatacacaTGTGAAAAGTGTGGCAAAAACTTCTCACAATCATCAAACTTAACAAAGCACATGAGATATCACACTGGTGATAAACCTTTCACatgtgtagtgtgtgataaaacattttcacaatcctATCACTTAACAACCCACATGatgactcacactggtgagaaaccatacacaTGTGAAAAGTGTGGCAAAAACTTCTCTCGATCATCAAACTTAACAaagcacatgagaattcacactggttaTAAACCAAAGCATTCTTTTGCTGCACAAAATCAGTTGGTTCCAAGTTTATTACACAACATTAAGTCCCGAGAAGTTGTCCAGCCTGATTACTCCTCCAGTTCCATGCACAGGGACAAGCAAGTGTCTCATGTTAGAGCAGCTTCAGTGTCGGTCCAGGTCCAGCAGCAGCGCCTCTTCATCCAGCAGTTGAGACTCATGCGTCACCATGACAAGGCAGCGCTGTATTGCAggtTGCCGTCcggtagagcgacagctgggctaaagctcacccctcTCTACCTGTATTTTTTGCTGAAGGTTCAGGTCAGCCCCGTGTCGTGCTTTGAGCCAGCCCAGATGGCCTCTTTACCCTACAAGGGCGCCTGCGAAACGCTGGTTGGGGCGCTAGCACCCCTCTGCAGTTTGTCGAGTTCAACCTTGACGGTAGCGCTGGCACTTCTAGTCAAGCGTAGCCTTTTTCCCTGA
- Protein Sequence
- MRIHTGDKPFKCIKCDGTFSQLGTLTRHMRTHTGEKPYNCVVCDRTFSRLGNLTTHMRIHTGDKPFPCVVCDKTFSQSSHLTSHMRNHTGEKPYTCVECDKNFSQSSDLTKHMRTHTGDKPYTCIECDKNFSQSSNLTMHMRTHTGVKPYKCVVCDRTFSHLGSLTAHMRTHTGDKPFKCIKCDGTFSLLGTLTSHMRTHTGEKPYTCEKCGKNFSQSSNLTKHMRYHTGDKPFTCVVCDKTFSQSYHLTTHMMTHTGEKPYTCEKCGKNFSRSSNLTKHMRIHTGYKPKHSFAAQNQLVPSLLHNIKSREVVQPDYSSSSMHRDKQVSHVRAASVSVQVQQQRLFIQQLRLMRHHDKAALYCRLPSGRATAGLKLTPLYLYFLLKVQVSPVSCFEPAQMASLPYKGACETLVGALAPLCSLSSSTLTVALALLVKRSLFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678788;
- 90% Identity
- iTF_00678788;
- 80% Identity
- iTF_00678788;