Eocu043897.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- JAEMUL010000047.1:15020-25524[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.013 8.6 7.9 0.0 22 45 5 28 2 35 0.90 2 9 6.2 4.2e+03 -0.7 0.0 23 44 62 83 59 87 0.87 3 9 0.14 94 4.5 0.0 21 46 88 113 80 119 0.84 4 9 0.0045 3 9.3 0.0 21 51 116 146 112 148 0.87 5 9 0.019 13 7.3 0.0 21 45 144 168 140 172 0.90 6 9 0.12 79 4.8 0.0 21 46 172 197 168 201 0.89 7 9 1.9 1.3e+03 0.9 0.1 21 44 269 292 260 296 0.78 8 9 0.18 1.2e+02 4.2 0.0 21 46 297 322 289 328 0.83 9 9 0.23 1.6e+02 3.8 0.0 22 44 326 348 320 351 0.88
Sequence Information
- Coding Sequence
- ATGAACACTGTAGAGAAACCTGACAAATGTGTAGACTGTGATGCAGCATTCTCACAATCGACATCCTTAAGGAAACACTCAAGGATCCACACCGGTGAAAACCCTTACAAAAATGTTGAATGCGATACAGTGTCCTCACATTTCACAAACTCAACACGTCGCATACTAACAAATGCTGGCGGGAAACCATTTAgctgtgttgaatgtgataaaacattcagGCTATCCACACACTTGACAAAACATATGAGAACTCACACAGGCGAAAGACCATTCAAATGTGTCGACTGTGGTAATACATTCTCGCAATCTTCAAATTTATCAAcccacatgaggactcacactggtgagaaaccatacaaatgtgctgtgtgtgataaaacatttgcgGAATCCTCAAACTTAATAaggcacatgaggattcactctggtgagaaaccatacatttgtgttgaatgtgataaagtaTTCAGACTATCCTCAGACTTGACAAGACATatgagaactcacactggtgaaaaaccatacaaatgtgccgAGTGTGATAAAATGTTTGCACAATCTTCAAACTTAATCGggcacatgagaattcacactgtatcATCAACCTTAATAACACACATCAGGATCCACTCTGGTGAAAAGccttacaaatgtgttgaatgtgataaaaagttCTTAGATTCCTCAAAGTTAGCATGtcacatgagaactcacactggcgagaaaccatacaaatgtgtagaaTGTAGCAAAGAATTCTCACTATCTGCACATTTGACACATCATATGAGAACCCACTCTGGTGAaagaccatacaaatgtgttgaatgttatAAAGCATTCTCATTAGCCTCGCACTTGGTGAAACACATGAGAACCCACACTGAGGAACGACCATTcaagtgtgttgagtgtgattATACATTTTCGCAATCCTCAAATTTAGCAACCCACATGAGAACCCATACTGGTgacaaaccttacaaatgtgtcgagtgcGGTAAAACATTTGCACAATCCTCAAACTTGGTAAGGCACACAAGAagtcacactgGTGGACTCGACGAGGGCGAAGATACGAGGATGGAAGGAAGAATCCTTGCACAGGTCAAGATGGAGGATGTAGTTGGAGGTCCAGCTTGGACTGTAGAGAGTCAGGCCTATCATGCGAGATGGAGCCAGTTGTGGCTTAGGGGTTACGAGCTGGACTGCACTTGTCTGGAATTGGTCAAGTACTTAATTAAAAAGATCAGGTTCTCGAGTCAAGTGTCCAACACGGTCTTTCAGTGA
- Protein Sequence
- MNTVEKPDKCVDCDAAFSQSTSLRKHSRIHTGENPYKNVECDTVSSHFTNSTRRILTNAGGKPFSCVECDKTFRLSTHLTKHMRTHTGERPFKCVDCGNTFSQSSNLSTHMRTHTGEKPYKCAVCDKTFAESSNLIRHMRIHSGEKPYICVECDKVFRLSSDLTRHMRTHTGEKPYKCAECDKMFAQSSNLIGHMRIHTVSSTLITHIRIHSGEKPYKCVECDKKFLDSSKLACHMRTHTGEKPYKCVECSKEFSLSAHLTHHMRTHSGERPYKCVECYKAFSLASHLVKHMRTHTEERPFKCVECDYTFSQSSNLATHMRTHTGDKPYKCVECGKTFAQSSNLVRHTRSHTGGLDEGEDTRMEGRILAQVKMEDVVGGPAWTVESQAYHARWSQLWLRGYELDCTCLELVKYLIKKIRFSSQVSNTVFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678745;
- 90% Identity
- iTF_00678745;
- 80% Identity
- iTF_00678745;