Eocu000376.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:3475405-3476730[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.007 4.7 8.7 0.0 12 46 24 57 15 65 0.83 2 10 0.0099 6.7 8.2 0.0 21 46 88 113 70 120 0.85 3 10 2 1.4e+03 0.8 0.0 21 51 172 202 167 204 0.84 4 10 0.59 4e+02 2.5 0.0 21 47 228 254 223 261 0.84 5 10 0.6 4.1e+02 2.5 0.0 20 48 255 283 239 287 0.80 6 10 0.044 30 6.1 0.0 21 52 284 315 277 317 0.87 7 10 0.92 6.2e+02 1.9 0.0 21 44 312 335 309 338 0.91 8 10 0.028 19 6.7 0.0 21 49 340 368 336 371 0.86 9 10 0.0083 5.6 8.5 0.1 21 51 368 398 364 400 0.87 10 10 1.3 9e+02 1.4 0.2 21 46 396 421 392 427 0.85
Sequence Information
- Coding Sequence
- ATGTACACTGGTGGAGAATCTTACAAATGTGTaaagtgtgataaaacattctctaAATCATCAAACTTAACAGAGCACATGAGGAgtcatactggtgaaaaaccatgcAAATGTGTTCTGTGTGGTACAACATTTTCACAAACCTCAAGCTTAAAAAAACACATGATGACTCACACTGGTGGAAAACCTTACAAGTGCGTGGAGTGTGATACATCATTCTCACAACCCACAAGCTTAAAAgtacacatgagaattcacactggtgaaaaaccttacACATGTGCTGAGTGTGATCGAGCATTTTCACAATCCTCAAACTTAATAGagcacatgaggactcacactggtgataaaccatacaaatgtgttgagtgtgagaAATCATTCTCAAGATTCTCACATTTATCTAGGCACaagaggactcacactggtgtaaagccatataaatgtgttgaatgtggtAAAGACTTTGCAGAATCCTCAATATTAACAGtgcacatgaggactcacactggtgaaaaaccatacagatgtgttgagtgtgataaagcattcacacaatcttcaattttaacagAGCACAtaaggattcacactggtgagaaaccatacaaatgtgttgagtgtgataagaCATTCTCAAAAGCCTCATATTTAACAGCCCACCAGAaaactcacactggtgaaaaaccatatgaatgtgttgagtgtgatagaGCATTCAAACAATCCTCAACATTAACAGagcacatgaggactcacactggtgagaaaccatacatttgtattgagtgtgataaaacatttacacaATCCTCCAGCCTATTTAATCACATGAGGATGCACACCGgcgaaaaaccatacaaatgtgccgAGTGTGATAACACATTCTCACAAGcctcaaatttaacaaaacacaTGAGGATCCACAccggtgagaaaccatacaattgTGATAAATGTGATAGAGCGTTTTCATTATCCTCGGACTTAAGAAAGCACATAAGGACTCACACTGgcgaaaaaccatacaaatgtttaatgtgtgataaatcattctcaCAATCCTCAAGCCTTAAGAAACACATGAGGATgcatactggtgaaaaaccatacaaatgtgctgcgtgtgaaaaaatattctcacaGTCCTCTAACTTAATAgagcacatgaggattcatactggcgagaaaccgtacaaatgtgttgagtgtgataaaacattttcaagatACTCAAATATATCAAGGCACCTAAGGATTCACTCTGGTGGTAAACATAACAAATGTGTTGGTGTGATAAAGCATTCAGATTCTTTGAAGTGA
- Protein Sequence
- MYTGGESYKCVKCDKTFSKSSNLTEHMRSHTGEKPCKCVLCGTTFSQTSSLKKHMMTHTGGKPYKCVECDTSFSQPTSLKVHMRIHTGEKPYTCAECDRAFSQSSNLIEHMRTHTGDKPYKCVECEKSFSRFSHLSRHKRTHTGVKPYKCVECGKDFAESSILTVHMRTHTGEKPYRCVECDKAFTQSSILTEHIRIHTGEKPYKCVECDKTFSKASYLTAHQKTHTGEKPYECVECDRAFKQSSTLTEHMRTHTGEKPYICIECDKTFTQSSSLFNHMRMHTGEKPYKCAECDNTFSQASNLTKHMRIHTGEKPYNCDKCDRAFSLSSDLRKHIRTHTGEKPYKCLMCDKSFSQSSSLKKHMRMHTGEKPYKCAACEKIFSQSSNLIEHMRIHTGEKPYKCVECDKTFSRYSNISRHLRIHSGGKHNKCVGVIKHSDSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678665;
- 90% Identity
- iTF_00678665;
- 80% Identity
- iTF_00678665;