Eocu001292.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:18773787-18774941[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.1 6.1e+03 -1.3 0.0 37 52 6 21 4 28 0.88 2 9 0.38 2.6e+02 3.1 0.0 21 46 46 71 43 77 0.86 3 9 0.016 11 7.5 0.0 22 47 75 100 71 105 0.85 4 9 0.08 54 5.3 0.0 21 47 102 128 99 134 0.86 5 9 0.075 51 5.4 0.0 21 48 158 185 150 189 0.84 6 9 0.64 4.3e+02 2.4 0.0 21 45 186 210 183 213 0.91 7 9 0.034 23 6.5 0.0 16 48 264 297 256 303 0.80 8 9 0.43 2.9e+02 3.0 0.1 21 46 326 351 318 357 0.88 9 9 2.4 1.6e+03 0.6 0.0 21 44 353 376 350 380 0.85
Sequence Information
- Coding Sequence
- ATGACATGCACTTCATCTGCTACTCTCACAAGACACATGACTATTCACACAGGAGCCAAACCTTATCATTGTGTTGCGTGTGGTAAAACATTCTCAACATCAAGCCACCTCACAAGACACACGCTGATTCATACAGGGGAAAAACCATTCAAATGCATTGAGTGTGATGCTACATTCTCAGAATCAGGTTCACTAAAGAAGCACATGTTGGTTCACACAGGTGAcaagccatttaaatgtattgagtgTGATGCTACATTCTCACAATCAGGTTCTTTAAAAAGACACATGAtgattcatactggtgaaaaaccatttaaGTGTGATGTGTGTGATTCTACATTCACACTATCAGGTACTTTACAAAGACACATGTtgattcatactggtgaaaagccatttaagtgtGGTGAGTGTGAAACAGCATTTTCACGGTTGGGGCATCTAACAAATCACATGAGAactcatacaggtgaaaagccatttaaatgcaTGATGTGTGATAGTACATTTGCACAGTCAGGTTCCTTAACAtcacacatgaggattcatacaggtgaaaagccattcaaaTGTGCCGAGTGTTTGAAATCATTCTCCGAGTCAAGCAAACTAACAAGACACATGAAGACACACACTGGTGGCTTGTCATACAATTGTTTtgtgtgtaataaaaaattatcaggaTCAGGTTCCCTAACAGAACACATcaggattcatacaggtgaaaaaccattcaaatgCGTTGAGTGTGATAGTACATTTTCTCTATCTGGTTCCCTGAAAATTCACATGAGAAgtcatacaggtgaaaagccattcaaatgtgttgattGTGGTGCTACATTCTCAGAATCAGGTTCTTTGAAAAGACACAAgaggattcatactggtgaaaaaccatttaaatgtggTGAGTGTGATAGAACATTTTCTCTATCAGATTCCCTGAAAATACATATGAGAATACATACAGGTGAGAAACCTTTTATATGCGTTGTTTGTGATAGAACATTCTCACGATCACATCACCTAACAAACCACATGAAGATTCATGAAgaaaaaccattcaaatgtgttgtGTGCAATAAATTGTTCTCTGTGTCAAGTGAACTAGCAGTACACATGAAGACACATGCTGGTAAAGTGTCTtag
- Protein Sequence
- MTCTSSATLTRHMTIHTGAKPYHCVACGKTFSTSSHLTRHTLIHTGEKPFKCIECDATFSESGSLKKHMLVHTGDKPFKCIECDATFSQSGSLKRHMMIHTGEKPFKCDVCDSTFTLSGTLQRHMLIHTGEKPFKCGECETAFSRLGHLTNHMRTHTGEKPFKCMMCDSTFAQSGSLTSHMRIHTGEKPFKCAECLKSFSESSKLTRHMKTHTGGLSYNCFVCNKKLSGSGSLTEHIRIHTGEKPFKCVECDSTFSLSGSLKIHMRSHTGEKPFKCVDCGATFSESGSLKRHKRIHTGEKPFKCGECDRTFSLSDSLKIHMRIHTGEKPFICVVCDRTFSRSHHLTNHMKIHEEKPFKCVVCNKLFSVSSELAVHMKTHAGKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678735;
- 90% Identity
- iTF_00678735;
- 80% Identity
- iTF_00678735;